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<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>RMarkdown</title>
<meta charset="utf-8" />
<meta name="author" content="Tom Mock, PhD • RStudio" />
<meta name="date" content="2022-04-26" />
<script src="libs/header-attrs/header-attrs.js"></script>
<link href="libs/remark-css/default.css" rel="stylesheet" />
<meta name="github-repo" content="jthomasmock/rmd-nhs"/>
<meta name="twitter:title" content="RMarkdown for reproducible reporting"/>
<meta name="twitter:description" content="An introduction to the RMarkdown package for reproducible reporting in RStudio"/>
<meta name="twitter:url" content="https://jthomasmock.github.io/rmd-nhs/"/>
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<meta name="twitter:card" content="summary_large_image"/>
<meta name="twitter:creator" content="@thomas_mock"/>
<meta name="twitter:site" content="@thomas_mock"/>
<meta property="og:title" content="RMarkdown for reproducible reporting"/>
<meta property="og:description" content="An introduction to the RMarkdown package for reproducible reporting in RStudio"/>
<meta property="og:url" content="https://jthomasmock.github.io/rmd-nhs/"/>
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<meta property="og:type" content="website"/>
<meta property="og:locale" content="en_US"/>
<meta property="article:author" content="Tom Mock"/>
<link rel="stylesheet" href="css/my-theme.css" type="text/css" />
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class: title-slide, left, top
# RMarkdown:
## reproducible reporting
### Tom Mock, PhD • RStudio
### 2022-04-26
<svg aria-hidden="true" role="img" viewBox="0 0 496 512" style="height:1em;width:0.97em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:white;overflow:visible;position:relative;"><path d="M165.9 397.4c0 2-2.3 3.6-5.2 3.6-3.3.3-5.6-1.3-5.6-3.6 0-2 2.3-3.6 5.2-3.6 3-.3 5.6 1.3 5.6 3.6zm-31.1-4.5c-.7 2 1.3 4.3 4.3 4.9 2.6 1 5.6 0 6.2-2s-1.3-4.3-4.3-5.2c-2.6-.7-5.5.3-6.2 2.3zm44.2-1.7c-2.9.7-4.9 2.6-4.6 4.9.3 2 2.9 3.3 5.9 2.6 2.9-.7 4.9-2.6 4.6-4.6-.3-1.9-3-3.2-5.9-2.9zM244.8 8C106.1 8 0 113.3 0 252c0 110.9 69.8 205.8 169.5 239.2 12.8 2.3 17.3-5.6 17.3-12.1 0-6.2-.3-40.4-.3-61.4 0 0-70 15-84.7-29.8 0 0-11.4-29.1-27.8-36.6 0 0-22.9-15.7 1.6-15.4 0 0 24.9 2 38.6 25.8 21.9 38.6 58.6 27.5 72.9 20.9 2.3-16 8.8-27.1 16-33.7-55.9-6.2-112.3-14.3-112.3-110.5 0-27.5 7.6-41.3 23.6-58.9-2.6-6.5-11.1-33.3 2.6-67.9 20.9-6.5 69 27 69 27 20-5.6 41.5-8.5 62.8-8.5s42.8 2.9 62.8 8.5c0 0 48.1-33.6 69-27 13.7 34.7 5.2 61.4 2.6 67.9 16 17.7 25.8 31.5 25.8 58.9 0 96.5-58.9 104.2-114.8 110.5 9.2 7.9 17 22.9 17 46.4 0 33.7-.3 75.4-.3 83.6 0 6.5 4.6 14.4 17.3 12.1C428.2 457.8 496 362.9 496 252 496 113.3 383.5 8 244.8 8zM97.2 352.9c-1.3 1-1 3.3.7 5.2 1.6 1.6 3.9 2.3 5.2 1 1.3-1 1-3.3-.7-5.2-1.6-1.6-3.9-2.3-5.2-1zm-10.8-8.1c-.7 1.3.3 2.9 2.3 3.9 1.6 1 3.6.7 4.3-.7.7-1.3-.3-2.9-2.3-3.9-2-.6-3.6-.3-4.3.7zm32.4 35.6c-1.6 1.3-1 4.3 1.3 6.2 2.3 2.3 5.2 2.6 6.5 1 1.3-1.3.7-4.3-1.3-6.2-2.2-2.3-5.2-2.6-6.5-1zm-11.4-14.7c-1.6 1-1.6 3.6 0 5.9 1.6 2.3 4.3 3.3 5.6 2.3 1.6-1.3 1.6-3.9 0-6.2-1.4-2.3-4-3.3-5.6-2z"/></svg> [github.com/jthomasmock/rmd-nhs/](https://github.com/jthomasmock/rmd-nhs/tree/master/workshop)
<svg aria-hidden="true" role="img" viewBox="0 0 512 512" style="height:1em;width:1em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:white;overflow:visible;position:relative;"><path d="M326.612 185.391c59.747 59.809 58.927 155.698.36 214.59-.11.12-.24.25-.36.37l-67.2 67.2c-59.27 59.27-155.699 59.262-214.96 0-59.27-59.26-59.27-155.7 0-214.96l37.106-37.106c9.84-9.84 26.786-3.3 27.294 10.606.648 17.722 3.826 35.527 9.69 52.721 1.986 5.822.567 12.262-3.783 16.612l-13.087 13.087c-28.026 28.026-28.905 73.66-1.155 101.96 28.024 28.579 74.086 28.749 102.325.51l67.2-67.19c28.191-28.191 28.073-73.757 0-101.83-3.701-3.694-7.429-6.564-10.341-8.569a16.037 16.037 0 0 1-6.947-12.606c-.396-10.567 3.348-21.456 11.698-29.806l21.054-21.055c5.521-5.521 14.182-6.199 20.584-1.731a152.482 152.482 0 0 1 20.522 17.197zM467.547 44.449c-59.261-59.262-155.69-59.27-214.96 0l-67.2 67.2c-.12.12-.25.25-.36.37-58.566 58.892-59.387 154.781.36 214.59a152.454 152.454 0 0 0 20.521 17.196c6.402 4.468 15.064 3.789 20.584-1.731l21.054-21.055c8.35-8.35 12.094-19.239 11.698-29.806a16.037 16.037 0 0 0-6.947-12.606c-2.912-2.005-6.64-4.875-10.341-8.569-28.073-28.073-28.191-73.639 0-101.83l67.2-67.19c28.239-28.239 74.3-28.069 102.325.51 27.75 28.3 26.872 73.934-1.155 101.96l-13.087 13.087c-4.35 4.35-5.769 10.79-3.783 16.612 5.864 17.194 9.042 34.999 9.69 52.721.509 13.906 17.454 20.446 27.294 10.606l37.106-37.106c59.271-59.259 59.271-155.699.001-214.959z"/></svg> [jthomasmock.github.io/rmd-nhs/index.html](https://jthomasmock.github.io/rmd-nhs/index.html)
<span style='color:white;'>Slides released under</span> [CC-BY 2.0](https://creativecommons.org/licenses/by/2.0/)&nbsp;&nbsp;<svg aria-hidden="true" role="img" viewBox="0 0 496 512" style="height:1em;width:0.97em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:white;overflow:visible;position:relative;"><path d="M245.83 214.87l-33.22 17.28c-9.43-19.58-25.24-19.93-27.46-19.93-22.13 0-33.22 14.61-33.22 43.84 0 23.57 9.21 43.84 33.22 43.84 14.47 0 24.65-7.09 30.57-21.26l30.55 15.5c-6.17 11.51-25.69 38.98-65.1 38.98-22.6 0-73.96-10.32-73.96-77.05 0-58.69 43-77.06 72.63-77.06 30.72-.01 52.7 11.95 65.99 35.86zm143.05 0l-32.78 17.28c-9.5-19.77-25.72-19.93-27.9-19.93-22.14 0-33.22 14.61-33.22 43.84 0 23.55 9.23 43.84 33.22 43.84 14.45 0 24.65-7.09 30.54-21.26l31 15.5c-2.1 3.75-21.39 38.98-65.09 38.98-22.69 0-73.96-9.87-73.96-77.05 0-58.67 42.97-77.06 72.63-77.06 30.71-.01 52.58 11.95 65.56 35.86zM247.56 8.05C104.74 8.05 0 123.11 0 256.05c0 138.49 113.6 248 247.56 248 129.93 0 248.44-100.87 248.44-248 0-137.87-106.62-248-248.44-248zm.87 450.81c-112.54 0-203.7-93.04-203.7-202.81 0-105.42 85.43-203.27 203.72-203.27 112.53 0 202.82 89.46 202.82 203.26-.01 121.69-99.68 202.82-202.84 202.82z"/></svg><svg aria-hidden="true" role="img" viewBox="0 0 496 512" style="height:1em;width:0.97em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:white;overflow:visible;position:relative;"><path d="M314.9 194.4v101.4h-28.3v120.5h-77.1V295.9h-28.3V194.4c0-4.4 1.6-8.2 4.6-11.3 3.1-3.1 6.9-4.7 11.3-4.7H299c4.1 0 7.8 1.6 11.1 4.7 3.1 3.2 4.8 6.9 4.8 11.3zm-101.5-63.7c0-23.3 11.5-35 34.5-35s34.5 11.7 34.5 35c0 23-11.5 34.5-34.5 34.5s-34.5-11.5-34.5-34.5zM247.6 8C389.4 8 496 118.1 496 256c0 147.1-118.5 248-248.4 248C113.6 504 0 394.5 0 256 0 123.1 104.7 8 247.6 8zm.8 44.7C130.2 52.7 44.7 150.6 44.7 256c0 109.8 91.2 202.8 203.7 202.8 103.2 0 202.8-81.1 202.8-202.8.1-113.8-90.2-203.3-202.8-203.3z"/></svg> ]
<div style = "position: absolute;top: -50px;right: -200px;"><img src="images/letters.png" alt="A collection of wooden letters loosely arranged. The letters are used for stamps." width="800"></img></div>
<div style = "position: absolute;bottom: 5px;right:25px;font-size:8px;color:white;">Image Credit: Bruno Martins, unsplash.com/photos/OhJmwB4XWLE</div>
---
layout: true
<div class="my-footer"><span>jthomasmock.github.io/rmd-nhs/</span></div>
---
# Resources
### Workshop materials: [on Github](https://github.com/jthomasmock/rmd-nhs/tree/master/workshop)
### Slides: [jthomasmock.github.io/rmd-nhs/](https://jthomasmock.github.io/rmd-nhs/)
Some content adapted from superstar Dr. Alison Hill [CDC](https://www.apreshill.com/talk/2020-rmd4cdc/) & [R4Pharma](https://rmd4pharma.netlify.app/): CC-BY
---
### What is R Markdown?
1. ["An authoring framework for data science."](https://rmarkdown.rstudio.com/lesson-1.html) (✔️)
1. [A document format (.Rmd).](https://bookdown.org/yihui/rmarkdown/) (✔️)
1. [An R package named rmarkdown.](https://rmarkdown.rstudio.com/docs/) (✔️)
1. ["A file format for making dynamic documents with R."](https://rmarkdown.rstudio.com/articles_intro.html) (✔️)
1. ["A tool for integrating text, code, and results."](https://r4ds.had.co.nz/communicate-intro.html) (✔️)
1. ["A computational document."](http://radar.oreilly.com/2011/07/wolframs-computational-documen.html) (✔️)
--
1. Magic (🧙️)
---
background-image: url("https://raw.githubusercontent.com/allisonhorst/stats-illustrations/master/rstats-artwork/rmarkdown_wizards.png")
background-position: center
background-size: contain
---
### Why RMarkdown?
1. Reproducibility
--
2. Re-usability
--
3. Extensibility
--
4. "Lazy" ability
---
### Change your mental model
.pull-left[
#### Source <-> Output
<img src="images/word.png" width="50%" />
]
--
.pull-right[
#### Source -> Output
<img src="images/rmd-file.png" width="50%" />
]
---
### R Markdown
> R Markdown documents are fully reproducible. Use a productive notebook interface to weave together narrative text and code to produce elegantly formatted output. Use multiple languages including R, Python, and SQL.
--
No more copy-paste, no more manually rebuilding analyses from disparate components, no more dread when the data is updated and you need to run an analysis.
---
background-image: url("https://images.unsplash.com/4/madebyvadim.jpg?ixid=MnwxMjA3fDB8MHxwaG90by1wYWdlfHx8fGVufDB8fHx8&ixlib=rb-1.2.1&auto=format&fit=crop&w=1469&q=80")
background-position: center
background-size: fill
class: center, middle
--
<h1 style='color:black;background-color: rgba(255,255,255,0.75);padding:5px;line-height:2em;'>Ease of Use VS Full Details</h1>
---
### Pouring milk
A straight-forward task - pour the boxed milk into the glass.
--
.pull-left[
> Easy to use
]
--
.pull-right[
> Understanding the Full details
]
---
.pull-left[
### Many [RMarkdown Formats](https://rmarkdown.rstudio.com/formats.html)
<div id="zdrofucuzu" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>@import url("https://fonts.googleapis.com/css2?family=Open+Sans:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Fira+Mono:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Source+Sans+Pro:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Libre+Franklin:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Source+Sans+Pro:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
html {
font-family: 'Open Sans', -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
}
#zdrofucuzu .gt_table {
display: table;
border-collapse: collapse;
margin-left: auto;
margin-right: auto;
color: #333333;
font-size: 16px;
font-weight: normal;
font-style: none;
background-color: #FFFFFF;
width: auto;
border-top-style: none;
border-top-width: 2px;
border-top-color: #A8A8A8;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #A8A8A8;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
}
#zdrofucuzu .gt_heading {
background-color: #FFFFFF;
text-align: left;
border-bottom-color: #FFFFFF;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
}
#zdrofucuzu .gt_title {
color: #333333;
font-size: 125%;
font-weight: initial;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
border-bottom-color: #FFFFFF;
border-bottom-width: 0;
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#zdrofucuzu .gt_subtitle {
color: #333333;
font-size: 85%;
font-weight: initial;
padding-top: 0;
padding-bottom: 6px;
padding-left: 5px;
padding-right: 5px;
border-top-color: #FFFFFF;
border-top-width: 0;
}
#zdrofucuzu .gt_bottom_border {
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#zdrofucuzu .gt_col_headings {
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 1px;
border-bottom-color: #334422;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
}
#zdrofucuzu .gt_col_heading {
color: #333333;
background-color: #FFFFFF;
font-size: 12px;
font-weight: normal;
text-transform: inherit;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: bottom;
padding-top: 5px;
padding-bottom: 6px;
padding-left: 5px;
padding-right: 5px;
overflow-x: hidden;
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#zdrofucuzu .gt_column_spanner_outer {
color: #333333;
background-color: #FFFFFF;
font-size: 12px;
font-weight: normal;
text-transform: inherit;
padding-top: 0;
padding-bottom: 0;
padding-left: 4px;
padding-right: 4px;
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#zdrofucuzu .gt_column_spanner_outer:first-child {
padding-left: 0;
}
#zdrofucuzu .gt_column_spanner_outer:last-child {
padding-right: 0;
}
#zdrofucuzu .gt_column_spanner {
border-bottom-style: none;
border-bottom-width: 1px;
border-bottom-color: #334422;
vertical-align: bottom;
padding-top: 5px;
padding-bottom: 5px;
overflow-x: hidden;
display: inline-block;
width: 100%;
}
#zdrofucuzu .gt_group_heading {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
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border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
}
#zdrofucuzu .gt_empty_group_heading {
padding: 0.5px;
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
vertical-align: middle;
}
#zdrofucuzu .gt_from_md > :first-child {
margin-top: 0;
}
#zdrofucuzu .gt_from_md > :last-child {
margin-bottom: 0;
}
#zdrofucuzu .gt_row {
padding-top: 7px;
padding-bottom: 7px;
padding-left: 5px;
padding-right: 5px;
margin: 10px;
border-top-style: none;
border-top-width: 1px;
border-top-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
overflow-x: hidden;
}
#zdrofucuzu .gt_stub {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
}
#zdrofucuzu .gt_stub_row_group {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
vertical-align: top;
}
#zdrofucuzu .gt_row_group_first td {
border-top-width: 2px;
}
#zdrofucuzu .gt_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#zdrofucuzu .gt_first_summary_row {
border-top-style: none;
border-top-color: #D3D3D3;
}
#zdrofucuzu .gt_first_summary_row.thick {
border-top-width: 2px;
}
#zdrofucuzu .gt_last_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#zdrofucuzu .gt_grand_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#zdrofucuzu .gt_first_grand_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-top-style: none;
border-top-width: 6px;
border-top-color: #D3D3D3;
}
#zdrofucuzu .gt_striped {
background-color: rgba(128, 128, 128, 0.05);
}
#zdrofucuzu .gt_table_body {
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #FFFFFF;
}
#zdrofucuzu .gt_footnotes {
color: #333333;
background-color: #FFFFFF;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#zdrofucuzu .gt_footnote {
margin: 0px;
font-size: 90%;
padding-left: 4px;
padding-right: 4px;
padding-left: 5px;
padding-right: 5px;
}
#zdrofucuzu .gt_sourcenotes {
color: #333333;
background-color: #FFFFFF;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#zdrofucuzu .gt_sourcenote {
font-size: 90%;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
}
#zdrofucuzu .gt_left {
text-align: left;
}
#zdrofucuzu .gt_center {
text-align: center;
}
#zdrofucuzu .gt_right {
text-align: right;
font-variant-numeric: tabular-nums;
}
#zdrofucuzu .gt_font_normal {
font-weight: normal;
}
#zdrofucuzu .gt_font_bold {
font-weight: bold;
}
#zdrofucuzu .gt_font_italic {
font-style: italic;
}
#zdrofucuzu .gt_super {
font-size: 65%;
}
#zdrofucuzu .gt_two_val_uncert {
display: inline-block;
line-height: 1em;
text-align: right;
font-size: 60%;
vertical-align: -0.25em;
margin-left: 0.1em;
}
#zdrofucuzu .gt_footnote_marks {
font-style: italic;
font-weight: normal;
font-size: 75%;
vertical-align: 0.4em;
}
#zdrofucuzu .gt_asterisk {
font-size: 100%;
vertical-align: 0;
}
#zdrofucuzu .gt_slash_mark {
font-size: 0.7em;
line-height: 0.7em;
vertical-align: 0.15em;
}
#zdrofucuzu .gt_fraction_numerator {
font-size: 0.6em;
line-height: 0.6em;
vertical-align: 0.45em;
}
#zdrofucuzu .gt_fraction_denominator {
font-size: 0.6em;
line-height: 0.6em;
vertical-align: -0.05em;
}
</style>
<table class="gt_table">
<thead class="gt_col_headings">
<tr>
<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1"></th>
<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" style="color: #A9A9A9; font-family: 'Source Sans Pro'; text-transform: uppercase;"></th>
</tr>
</thead>
<tbody class="gt_table_body">
<tr class="gt_group_heading_row">
<td colspan="2" class="gt_group_heading" style="border-bottom-width: 3px; border-bottom-style: solid; border-bottom-color: black; color: #000000; font-weight: bold; background-color: #D3D3D3;">Documents</td>
</tr>
<tr class="gt_row_group_first"><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/notebook.html' style='text-decoration:none;' target='_blank'>
Notebook</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">Interactive R Notebooks</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/html-document.html' style='text-decoration:none;' target='_blank'>
HTML</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">HTML document w/ Bootstrap CSS</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/pdf-document.html' style='text-decoration:none;' target='_blank'>
PDF</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">PDF document (via LaTeX template)</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/word-document.html' style='text-decoration:none;' target='_blank'>
Word</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">Microsoft Word document (docx)</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/opendocument-text-document.html' style='text-decoration:none;' target='_blank'>
ODT</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">OpenDocument Text document</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/rich-text-format-document.html' style='text-decoration:none;' target='_blank'>
RTF</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">Rich Text Format document</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/markdown-document.html' style='text-decoration:none;' target='_blank'>
Markdown</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">Markdown document (various flavors)</td></tr>
<tr class="gt_group_heading_row">
<td colspan="2" class="gt_group_heading" style="border-bottom-width: 3px; border-bottom-style: solid; border-bottom-color: black; color: #000000; font-weight: bold; background-color: #D3D3D3;">Presentations</td>
</tr>
<tr class="gt_row_group_first"><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/ioslides-presentation.html' style='text-decoration:none;' target='_blank'>
ioslides</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">HTML presentation with ioslides</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/revealjs.html' style='text-decoration:none;' target='_blank'>
reveal.js</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">HTML presentation with reveal.js</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/slidy-presentation.html' style='text-decoration:none;' target='_blank'>
Slidy</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">HTML presentation with W3C Slidy</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/beamer-presentation.html' style='text-decoration:none;' target='_blank'>
Beamer</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">PDF presentation with LaTeX Beamer</td></tr>
<tr><td class="gt_row gt_right gt_stub" style="font-family: 'Fira Mono';"><a href ='https://bookdown.org/yihui/rmarkdown/powerpoint-presentation.html' style='text-decoration:none;' target='_blank'>
PowerPoint</a></td>
<td class="gt_row gt_left" style="font-family: 'Source Sans Pro'; font-weight: 400;">PowerPoint presentation</td></tr>
</tbody>
</table>
</div>
]
--
.pull-right[
<div id="viwrbzvubs" style="overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>@import url("https://fonts.googleapis.com/css2?family=Open+Sans:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Fira+Mono:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Source+Sans+Pro:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Libre+Franklin:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
@import url("https://fonts.googleapis.com/css2?family=Source+Sans+Pro:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
html {
font-family: 'Open Sans', -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
}
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display: table;
border-collapse: collapse;
margin-left: auto;
margin-right: auto;
color: #333333;
font-size: 16px;
font-weight: normal;
font-style: none;
background-color: #FFFFFF;
width: auto;
border-top-style: none;
border-top-width: 2px;
border-top-color: #A8A8A8;
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#viwrbzvubs .gt_title {
color: #333333;
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color: #333333;
font-size: 85%;
font-weight: initial;
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border-bottom-color: #334422;
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border-right-color: #D3D3D3;
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color: #333333;
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font-size: 12px;
font-weight: normal;
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border-left-color: #D3D3D3;
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border-right-color: #D3D3D3;
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text-transform: inherit;
border-top-style: none;
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border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
}
#viwrbzvubs .gt_empty_group_heading {
padding: 0.5px;
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
vertical-align: middle;
}
#viwrbzvubs .gt_from_md > :first-child {
margin-top: 0;
}
#viwrbzvubs .gt_from_md > :last-child {
margin-bottom: 0;
}
#viwrbzvubs .gt_row {
padding-top: 7px;
padding-bottom: 7px;
padding-left: 5px;
padding-right: 5px;
margin: 10px;
border-top-style: none;
border-top-width: 1px;
border-top-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
overflow-x: hidden;
}
#viwrbzvubs .gt_stub {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
}
#viwrbzvubs .gt_stub_row_group {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
vertical-align: top;
}
#viwrbzvubs .gt_row_group_first td {
border-top-width: 2px;
}
#viwrbzvubs .gt_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#viwrbzvubs .gt_first_summary_row {
border-top-style: none;
border-top-color: #D3D3D3;
}
#viwrbzvubs .gt_first_summary_row.thick {
border-top-width: 2px;
}
#viwrbzvubs .gt_last_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#viwrbzvubs .gt_grand_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#viwrbzvubs .gt_first_grand_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-top-style: none;
border-top-width: 6px;
border-top-color: #D3D3D3;
}
#viwrbzvubs .gt_striped {
background-color: rgba(128, 128, 128, 0.05);
}
#viwrbzvubs .gt_table_body {
border-top-style: none;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #FFFFFF;
}
#viwrbzvubs .gt_footnotes {
color: #333333;
background-color: #FFFFFF;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#viwrbzvubs .gt_footnote {
margin: 0px;
font-size: 90%;
padding-left: 4px;
padding-right: 4px;
padding-left: 5px;
padding-right: 5px;
}
#viwrbzvubs .gt_sourcenotes {
color: #333333;