The following is a manifest of the ProDOS files in this repo, with suffixes that indicate their filetype and load-in locaations, as named by CiderPress during extraction. In order to use the contents of this repo to build a ProDOS disk iamge, suitable for use in an emulator (or copying to physical media), you need to inject this missing metadata back into the files. One way to do that would be to rename the (suffixless) files to have the suffixes shown below, and then use CiderPress or Cadius to add them to a ProDOS-format disk image.
./AMACS.CHART#040000
./AMACS.CORVUS#ff0801
./AMACS.INIT#040000
./AMACS.INIT.GNU#040000
./AMACS.PATH#040000
./AMACS.SYSTEM#ff0801
./BIN
./BIN/AMACS.CHART#040000
./BIN/AMACS.OBJ#061000
./BIN/MAKECHART#ff2000
./BIN/SI.BUFFDUMP.OBJ#06d500
./BIN/SI.DOCS.OBJ#06ab00
./BIN/SI.INITFILES#06ab00
./BIN/SI.PARENSCAN#06d000
./BIN/SI.RAMACCESS#06d000
./CHANGE.HISTORY#040000
./DEFS
./DEFS/BANKSW.EQUS.S#040000
./DEFS/BUFFER.EQUS.S#040000
./DEFS/DISPLAY.EQUS.S#040000
./DEFS/DOC.EQUS.S#040000
./DEFS/EXTERNAL.EQUS.S#040000
./DEFS/FILER.EQUS.S#040000
./DEFS/LIBRARY.EQUS.S#040000
./DEFS/LINK.OUTPUT.S#040000
./DEFS/MODE.EQUS.S#040000
./DEFS/PRODOS.EQUS.S#040000
./DEFS/SCREEN.EQUS.S#040000
./DEFS/VAR.EQUS.S#040000
./EXAMPLES
./EXAMPLES/EXAMPLE.ASM#040000
./EXAMPLES/EXAMPLE.C#040000
./EXAMPLES/EXAMPLE.LISP#040000
./EXAMPLES/EXAMPLE.PASCAL#040000
./EXAMPLES/EXAMPLE.TEXT#040000
./EXAMPLES/QUICKSORT.C#040000
./EXAMPLES/TOOL.PASCAL#040000
./HELP
./HELP/AMACS.HELP0#040000
./HELP/AMACS.HELP1#04517a
./HELP/AMACS.HELP2#040000
./LIB
./LIB/BASIC#06d800
./LIB/BUFFDUMP#06d800
./LIB/CREDIR#06d800
./LIB/DEBUG#06d800
./LIB/DIRED#06d800
./LIB/EDITVARS#06d800
./LIB/FUNKY#06d800
./LIB/HISTORY#06d800
./LIB/LINKER#06d800
./LIB/MAIL#06d800
./LIB/MERLIN#06d800
./LIB/NOLIBS#06d800
./LIB/PHRASE#06d800
./LIB/PS#06d800
./LIB/PS.PREP#040000
./LIB/SETXOR#06d800
./LIB/TABSTOPS#06d800
./LIB/WORDABBREV#06d800
./LIB/WRITEREG#06d800
./MAKETAGS.DIR
./MAKETAGS.DIR/AMACS.FILES#040000
./MAKETAGS.DIR/AMACS.TAGS#040000
./MAKETAGS.DIR/BIN
./MAKETAGS.DIR/BIN/ENHBASICTAGS#06b900
./MAKETAGS.DIR/BIN/LISPTAGS#06b900
./MAKETAGS.DIR/BIN/MERLINREL#06b900
./MAKETAGS.DIR/BIN/MERLINTAGS#06b900
./MAKETAGS.DIR/BIN/TEXINFOTAGS#06b900
./MAKETAGS.DIR/CHUNKREAD.S#040000
./MAKETAGS.DIR/DEFS
./MAKETAGS.DIR/DEFS/ASM.CONDS.S#040000
./MAKETAGS.DIR/DEFS/MAKETAGS.EQUS.S#040000
./MAKETAGS.DIR/DEFS/PRODOS.EQUS.S#040000
./MAKETAGS.DIR/MACROS
./MAKETAGS.DIR/MACROS/PARSER.S#040000
./MAKETAGS.DIR/MACROS/STANDARD.S#040000
./MAKETAGS.DIR/MAKETAGS.ECP#f06000
./MAKETAGS.DIR/MAKETAGS.S#040000
./MAKETAGS.DIR/MAKETAGS.SYS#ff2000
./MAKETAGS.DIR/MKTAGS.SOURCE#040000
./MAKETAGS.DIR/MODESFILE#040000
./MAKETAGS.DIR/TAGPROCS
./MAKETAGS.DIR/TAGPROCS/CTAGS.S#040000
./MAKETAGS.DIR/TAGPROCS/ENHBASICTAGS.S#040000
./MAKETAGS.DIR/TAGPROCS/LISPTAGS.S#040000
./MAKETAGS.DIR/TAGPROCS/MERLINREL.S#040000
./MAKETAGS.DIR/TAGPROCS/MERLINTAGS.S#040000
./MAKETAGS.DIR/TAGPROCS/TAG.SUBS.S#040000
./MAKETAGS.DIR/TAGPROCS/TEXINFOTAGS.S#040000
./PS.INIT#040000
./RELEASE.NOTES#040000
./TUTORIAL
./TUTORIAL/TUTORIAL.DATA#060801