diff --git a/entities.csv b/entities.csv index 6330fe2e8..09109f6ae 100644 --- a/entities.csv +++ b/entities.csv @@ -71,6 +71,7 @@ BDKR BEST Beta_3_4_GTF BIRC +BLVR BMP BMP_receptor BMP_receptor_type_I @@ -117,12 +118,14 @@ Chemokine_receptor Chloride_calcium_activated_channels Chloride_channels Cholinesterase +CHK CHRM CHRN CK2 Clathrin CLCN CLIC +CLK CNG CNKSR Cofilin @@ -149,14 +152,17 @@ CTNNA CUL CXCL_ELR_negative CXCL_ELR_positive +Creatine_kinase Cyclin Cyclin_A Cyclin_D Cyclin_E Cyclophilin Cytoplasmic_dynein +DAPK DDR Death_receptor +Deoxyribonucleoside_kinases Desmoglein DGC DGK @@ -169,6 +175,7 @@ DYRK E2F E3_Ub_ligase EDN +EFN EGFR_ligand EGR EIF2B @@ -180,6 +187,8 @@ EIF4G ELA ENO Eotaxin +EPHA +EPHB Ephrin_receptor EPN ERBB @@ -192,6 +201,7 @@ ETC_complex_III ETC_complex_I_supernumerary ETC_complex_IV ETC_complex_V +ETNK ETS EXOC EXT @@ -335,6 +345,7 @@ MAP2K MAP3K MAPK MCM +MED MEF2 MEK Metallothionein @@ -342,6 +353,7 @@ MGAT Mitochondrial_Ribosome MKNK MMP +MOB MRPL MRPS mTORC1 @@ -369,6 +381,7 @@ NCOA NCOR NDRG Neurexins +Neuropeptides NFAT NFE NFkappaB @@ -444,6 +457,7 @@ Phosphatase PI3K PI3K_p110 PI3K_p85 +PI4K PIK3R_I PIM PKA @@ -503,6 +517,7 @@ RFX RGL RHO RhoGDI +RIPK RLR RNApo_I RNApo_II @@ -511,6 +526,9 @@ ROCK ROR RPA RSK +RSTK +RSTK1 +RSTK2 RTK RXR RYR @@ -544,6 +562,7 @@ Sodium_channels Sodium_voltage_gated_channel_alpha_subunits Sodium_voltage_gated_channel_beta_subunits SOS +SPHK SPRED SPRY SRC @@ -553,8 +572,10 @@ STAT5 STT3 Sulfonylurea_receptor SWI_SNF +TAC TAOK TAP +TAT_associated_kinase TCF_LEF TCR TEAD @@ -567,10 +588,12 @@ THR Thrombin_antithrombin TIAM TIF_IB +TK TLR TN TNF TNFRSF +TOP TOP2 TPCN Troponin diff --git a/equivalences.csv b/equivalences.csv index 2eb52b58c..b0ccc2473 100644 --- a/equivalences.csv +++ b/equivalences.csv @@ -489,6 +489,8 @@ HGNC_GROUP,305,AQP HGNC_GROUP,306,VDAC HGNC_GROUP,307,CLIC HGNC_GROUP,314,GJ +HGNC_GROUP,480,CLK +HGNC_GROUP,546,EFN HGNC_GROUP,563,GABR HGNC_GROUP,581,Augmin HGNC_GROUP,622,Kinesin @@ -497,11 +499,14 @@ HGNC_GROUP,641,ETC_complex_II HGNC_GROUP,642,ETC_complex_III HGNC_GROUP,643,ETC_complex_IV HGNC_GROUP,644,ETC_complex_V +HGNC_GROUP,647,MOB HGNC_GROUP,854,Neuropeptide_receptor HGNC_GROUP,856,KCNT HGNC_GROUP,865,ANO HGNC_GROUP,866,BEST HGNC_GROUP,868,GLRA_GLRB +HGNC_GROUP,1021,DAPK +HGNC_GROUP,1050,TOP HGNC_GROUP,1149,ETC_complex_I_core HGNC_GROUP,1150,ETC_complex_I_supernumerary HGNC_GROUP,1158,LRRC8 @@ -514,6 +519,10 @@ HGNC_GROUP,1511,CACNG HGNC_GROUP,1512,CACNA1 HGNC_GROUP,1514,CACNA2D HGNC_GROUP,1515,CACNB +HGNC_GROUP,1699,Deoxyribonucleoside_kinases +HGNC_GROUP,1901,TAC +HGNC_GROUP,1902,Neuropeptides +HGNC_GROUP,1908,EDN IP,IPR000074,Apolipoprotein IP,IPR000096,SAA IP,IPR000162,GRM diff --git a/export/famplex.belns b/export/famplex.belns index 3569f205d..0d1151bfe 100644 --- a/export/famplex.belns +++ b/export/famplex.belns @@ -2,8 +2,8 @@ Keyword=FPLX NameString=FamPlex DomainString=Gene and Gene Products -VersionString=20200121 -CreatedDateTime=2020-01-21T09:07:57 +VersionString=20200123 +CreatedDateTime=2020-01-23T22:36:43 DescriptionString=FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships. QueryValueURL=http://identifiers.org/fplx/ @@ -93,6 +93,7 @@ BCKDC|CGPR BDKR|CGPR BEST|CGPR BIRC|CGPR +BLVR|CGPR BMP|CGPR BMP_receptor|CGPR BMP_receptor_type_I|CGPR @@ -129,11 +130,13 @@ CDKN1|CGPR CDKN2|CGPR CEBP|CGPR CHEK|CGPR +CHK|CGPR CHRM|CGPR CHRN|CGPR CK2|CGPR CLCN|CGPR CLIC|CGPR +CLK|CGPR CNG|CGPR CNKSR|CGPR COL1|CGPR @@ -172,12 +175,14 @@ Cholinesterase|CGPR Clathrin|CGPR Cofilin|CGPR Cohesin|CGPR +Creatine_kinase|CGPR Cyclin|CGPR Cyclin_A|CGPR Cyclin_D|CGPR Cyclin_E|CGPR Cyclophilin|CGPR Cytoplasmic_dynein|CGPR +DAPK|CGPR DDR|CGPR DGC|CGPR DGK|CGPR @@ -188,10 +193,12 @@ DUSP|CGPR DVL|CGPR DYRK|CGPR Death_receptor|CGPR +Deoxyribonucleoside_kinases|CGPR Desmoglein|CGPR E2F|CGPR E3_Ub_ligase|CGPR EDN|CGPR +EFN|CGPR EGFR_ligand|CGPR EGR|CGPR EIF2B|CGPR @@ -202,6 +209,8 @@ EIF4EBP|CGPR EIF4G|CGPR ELA|CGPR ENO|CGPR +EPHA|CGPR +EPHB|CGPR EPN|CGPR ERBB|CGPR ERK|CGPR @@ -213,6 +222,7 @@ ETC_complex_IV|CGPR ETC_complex_I_core|CGPR ETC_complex_I_supernumerary|CGPR ETC_complex_V|CGPR +ETNK|CGPR ETS|CGPR EXOC|CGPR EXT|CGPR @@ -356,11 +366,13 @@ MAP2K|CGPR MAP3K|CGPR MAPK|CGPR MCM|CGPR +MED|CGPR MEF2|CGPR MEK|CGPR MGAT|CGPR MKNK|CGPR MMP|CGPR +MOB|CGPR MRPL|CGPR MRPS|CGPR MYH|CGPR @@ -405,6 +417,7 @@ Na_K_ATPase|CGPR Natriuretic_peptide|CGPR Neurexins|CGPR Neuropeptide_receptor|CGPR +Neuropeptides|CGPR Notch|CGPR OGT_family|CGPR OR|CGPR @@ -457,6 +470,7 @@ PFN|CGPR PI3K|CGPR PI3K_p110|CGPR PI3K_p85|CGPR +PI4K|CGPR PIK3R_I|CGPR PIM|CGPR PKA|CGPR @@ -518,6 +532,7 @@ RFC|CGPR RFX|CGPR RGL|CGPR RHO|CGPR +RIPK|CGPR RLR|CGPR RNApo_I|CGPR RNApo_II|CGPR @@ -526,6 +541,9 @@ ROCK|CGPR ROR|CGPR RPA|CGPR RSK|CGPR +RSTK|CGPR +RSTK1|CGPR +RSTK2|CGPR RTK|CGPR RXR|CGPR RYR|CGPR @@ -558,6 +576,7 @@ SMURF|CGPR SNAI|CGPR SOD|CGPR SOS|CGPR +SPHK|CGPR SPRED|CGPR SPRY|CGPR SRC|CGPR @@ -570,8 +589,10 @@ Sodium_channels|CGPR Sodium_voltage_gated_channel_alpha_subunits|CGPR Sodium_voltage_gated_channel_beta_subunits|CGPR Sulfonylurea_receptor|CGPR +TAC|CGPR TAOK|CGPR TAP|CGPR +TAT_associated_kinase|CGPR TCF_LEF|CGPR TCR|CGPR TEAD|CGPR @@ -583,10 +604,12 @@ THBS|CGPR THR|CGPR TIAM|CGPR TIF_IB|CGPR +TK|CGPR TLR|CGPR TN|CGPR TNF|CGPR TNFRSF|CGPR +TOP|CGPR TOP2|CGPR TPCN|CGPR TRP|CGPR diff --git a/export/famplex.obo b/export/famplex.obo index 8a6034d5f..62783147e 100644 --- a/export/famplex.obo +++ b/export/famplex.obo @@ -1,5 +1,5 @@ format-version: 1.2 -date: 20:01:2020 17:58 +date: 23:01:2020 22:36 [Term] id: FPLX:5_hydroxytryptamine_receptors_ionotropic @@ -505,6 +505,7 @@ inverse_is_a: HGNC:ALG8 id: FPLX:AMPK name: AMPK synonym: "AMPK" EXACT [] +synonym: "AMP-activated" EXACT [] xref: BEL:"AMP Activated Protein Kinase Complex" xref: ECCODE:2.7.11.31 xref: MEDSCAN:urn:agi-protfc:AMPK @@ -1191,6 +1192,14 @@ inverse_is_a: HGNC:BIRC8 inverse_is_a: HGNC:NAIP inverse_is_a: HGNC:XIAP +[Term] +id: FPLX:BLVR +name: BLVR +synonym: "BVR" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:BLVRA +inverse_is_a: HGNC:BLVRB + [Term] id: FPLX:BMP name: BMP @@ -1422,6 +1431,7 @@ id: FPLX:CAMK name: CAMK synonym: "CaMK family" EXACT [] synonym: "CaMK" EXACT [] +synonym: "CAMK" EXACT [] xref: BEL:"CAMK Family" xref: ECCODE:2.7.11.17 xref: NEXTPROT-FAMILY:03072 @@ -1437,9 +1447,19 @@ id: FPLX:CAMK2_complex name: CAMK2-complex synonym: "Ca(2+)-calmodulin-dependent protein kinase II" EXACT [] synonym: "Ca(2+)/calmodulin-dependent kinase II" EXACT [] +synonym: "calmodulindependent kinase II" EXACT [] synonym: "CaM kinase II" EXACT [] synonym: "CaMK II" EXACT [] +synonym: "CAMK2" EXACT [] +synonym: "CaMK2" EXACT [] synonym: "CaMKII" EXACT [] +synonym: "CAMKII" EXACT [] +synonym: "CaM serine/threonine kinase II" EXACT [] +synonym: "CAMK-II" EXACT [] +synonym: "CaMKII protein" EXACT [] +synonym: "CAM-KII" EXACT [] +synonym: "p-CaMKII" EXACT [] +synonym: "CaMK-II" EXACT [] xref: BEL:"CAMK2 Complex" xref: IP:IPR013543 xref: MEDSCAN:urn:agi-complex:CaM%20kinase%20II @@ -1456,11 +1476,6 @@ has_part: HGNC:CAMK2G [Term] id: FPLX:CAMK2_family name: CAMK2-family -synonym: "calmodulindependent kinase II" EXACT [] -synonym: "CAMK2" EXACT [] -synonym: "CaMK2" EXACT [] -synonym: "CAMKII" EXACT [] -synonym: "CaM serine/threonine kinase II" EXACT [] xref: BEL:"CAMK2 Family" xref: IP:IPR013543 xref: RE:R-HSA-417004 @@ -1801,10 +1816,10 @@ inverse_is_a: HGNC:CDK2 id: FPLX:CDKN name: CDKN synonym: "CDKN" EXACT [] -synonym: "CKI" EXACT [] synonym: "cyclin dependent kinase inhibitors" EXACT [] synonym: "cyclin-dependent kinase inhibitor" EXACT [] synonym: "cyclin-dependent protein kinase inhibitors" EXACT [] +synonym: "CKIs" EXACT [] xref: NCIT:C18492 xref: XFAM:PF02234 is_a: FPLX:root @@ -1816,6 +1831,7 @@ inverse_is_a: HGNC:CDKN3 id: FPLX:CDKN1 name: CDKN1 synonym: "CDKN1" EXACT [] +synonym: "Cdkn1" EXACT [] xref: IP:IPR003175 xref: RE:R-HSA-8941923 xref: RE:R-HSA-8942604 @@ -1932,6 +1948,16 @@ is_a: FPLX:root inverse_is_a: HGNC:ACHE inverse_is_a: HGNC:BCHE +[Term] +id: FPLX:CHK +name: CHK +synonym: "chk" EXACT [] +synonym: "ethanolamine kinase" EXACT [] +synonym: "choline kinase" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:CHKA +inverse_is_a: HGNC:CHKB + [Term] id: FPLX:CHRM name: CHRM @@ -2033,6 +2059,16 @@ inverse_is_a: HGNC:CLIC4 inverse_is_a: HGNC:CLIC5 inverse_is_a: HGNC:CLIC6 +[Term] +id: FPLX:CLK +name: CLK +xref: HGNC_GROUP:480 +is_a: FPLX:root +inverse_is_a: HGNC:CLK1 +inverse_is_a: HGNC:CLK2 +inverse_is_a: HGNC:CLK3 +inverse_is_a: HGNC:CLK4 + [Term] id: FPLX:CNG name: CNG @@ -2331,6 +2367,7 @@ synonym: "Casein kinase 1" EXACT [] synonym: "casein kinase 1" EXACT [] synonym: "casein kinase I" EXACT [] synonym: "CSNK1" EXACT [] +synonym: "CK-I" EXACT [] xref: BEL:"CSNK1 Family" xref: MEDSCAN:urn:agi-protfc:casein%20kinase%20I xref: NEXTPROT-FAMILY:03083 @@ -2425,6 +2462,18 @@ inverse_is_a: HGNC:CXCL6 inverse_is_a: HGNC:CXCL8 inverse_is_a: HGNC:PPBP +[Term] +id: FPLX:Creatine_kinase +name: Creatine-kinase +synonym: "creatine kinase" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:CKB +inverse_is_a: HGNC:CKBE +inverse_is_a: HGNC:CKM +inverse_is_a: HGNC:CKMT1A +inverse_is_a: HGNC:CKMT1B +inverse_is_a: HGNC:CKMT2 + [Term] id: FPLX:Cyclin name: Cyclin @@ -2551,6 +2600,19 @@ has_part: HGNC:DYNLL1 has_part: HGNC:DYNLRB1 has_part: HGNC:DYNLRB2 +[Term] +id: FPLX:DAPK +name: DAPK +synonym: "DAPK" EXACT [] +synonym: "DAPk" EXACT [] +xref: HGNC_GROUP:1021 +is_a: FPLX:root +inverse_is_a: HGNC:DAPK1 +inverse_is_a: HGNC:DAPK2 +inverse_is_a: HGNC:DAPK3 +inverse_is_a: HGNC:STK17A +inverse_is_a: HGNC:STK17B + [Term] id: FPLX:DDR name: DDR @@ -2579,6 +2641,17 @@ inverse_is_a: HGNC:TNFRSF10C inverse_is_a: HGNC:TNFRSF10D inverse_is_a: HGNC:FAS +[Term] +id: FPLX:Deoxyribonucleoside_kinases +name: Deoxyribonucleoside-kinases +xref: HGNC_GROUP:1699 +is_a: FPLX:root +inverse_is_a: HGNC:DCK +inverse_is_a: HGNC:DGUOK +inverse_is_a: FPLX:TK +inverse_is_a: HGNC:TK1 +inverse_is_a: HGNC:TK2 + [Term] id: FPLX:Desmoglein name: Desmoglein @@ -2630,6 +2703,7 @@ synonym: "DAG kinase" EXACT [] synonym: "DGK" EXACT [] synonym: "diacyl glycerol kinase" EXACT [] synonym: "diacylglycerol kinase" EXACT [] +synonym: "Dgk" EXACT [] xref: BEL:"DGK Family" xref: ECCODE:2.7.1.107 xref: IP:IPR000756 @@ -2774,17 +2848,34 @@ name: EDN synonym: "endothelin" EXACT [] synonym: "endothelins" EXACT [] xref: BEL:"EDN Family" +xref: HGNC_GROUP:1908 xref: IP:IPR001928 xref: IP:IPR019764 xref: IP:IPR020475 xref: MEDSCAN:urn:agi-protfc:endothelin xref: XFAM:PF00322 xref: RE:R-HSA-388544 -is_a: FPLX:root +is_a: FPLX:Neuropeptides inverse_is_a: HGNC:EDN1 inverse_is_a: HGNC:EDN2 inverse_is_a: HGNC:EDN3 +[Term] +id: FPLX:EFN +name: EFN +synonym: "ephrin" EXACT [] +synonym: "ephrins" EXACT [] +xref: HGNC_GROUP:546 +is_a: FPLX:root +inverse_is_a: HGNC:EFNA1 +inverse_is_a: HGNC:EFNA2 +inverse_is_a: HGNC:EFNA3 +inverse_is_a: HGNC:EFNA4 +inverse_is_a: HGNC:EFNA5 +inverse_is_a: HGNC:EFNB1 +inverse_is_a: HGNC:EFNB2 +inverse_is_a: HGNC:EFNB3 + [Term] id: FPLX:EGFR_ligand name: EGFR-ligand @@ -2924,19 +3015,9 @@ inverse_is_a: HGNC:CCL24 inverse_is_a: HGNC:CCL26 [Term] -id: FPLX:Ephrin_receptor -name: Ephrin-receptor -synonym: "Eph receptor" EXACT [] -synonym: "Eph receptors" EXACT [] -synonym: "ephrin receptor" EXACT [] -xref: BEL:"Ephrin Receptor Family" -xref: IP:IPR001090 -xref: IP:IPR001426 -xref: IP:IPR016257 -xref: IP:IPR027936 -xref: NCIT:C18606 -xref: NEXTPROT-FAMILY:03124 -is_a: FPLX:root +id: FPLX:EPHA +name: EPHA +is_a: FPLX:Ephrin_receptor inverse_is_a: HGNC:EPHA1 inverse_is_a: HGNC:EPHA2 inverse_is_a: HGNC:EPHA3 @@ -2945,12 +3026,35 @@ inverse_is_a: HGNC:EPHA5 inverse_is_a: HGNC:EPHA6 inverse_is_a: HGNC:EPHA7 inverse_is_a: HGNC:EPHA8 +inverse_is_a: HGNC:EPHA10 + +[Term] +id: FPLX:EPHB +name: EPHB +synonym: "EphB receptor" EXACT [] +is_a: FPLX:Ephrin_receptor inverse_is_a: HGNC:EPHB1 inverse_is_a: HGNC:EPHB2 inverse_is_a: HGNC:EPHB3 inverse_is_a: HGNC:EPHB4 inverse_is_a: HGNC:EPHB6 -inverse_is_a: HGNC:EPHA10 + +[Term] +id: FPLX:Ephrin_receptor +name: Ephrin-receptor +synonym: "Eph receptor" EXACT [] +synonym: "Eph receptors" EXACT [] +synonym: "ephrin receptor" EXACT [] +xref: BEL:"Ephrin Receptor Family" +xref: IP:IPR001090 +xref: IP:IPR001426 +xref: IP:IPR016257 +xref: IP:IPR027936 +xref: NCIT:C18606 +xref: NEXTPROT-FAMILY:03124 +is_a: FPLX:root +inverse_is_a: FPLX:EPHA +inverse_is_a: FPLX:EPHB [Term] id: FPLX:EPN @@ -2994,7 +3098,6 @@ synonym: "Erk1/2" EXACT [] synonym: "ERKs" EXACT [] synonym: "Extracellular Signal Regulated Kinase" EXACT [] synonym: "extracellular signal-regulated kinase" EXACT [] -synonym: "MAPK" EXACT [] synonym: "phospho-ERK1/2" EXACT [] synonym: "p44 and p42" EXACT [] synonym: "p42 and p44" EXACT [] @@ -3004,6 +3107,7 @@ synonym: "p42(mapk) and p44(mapk)" EXACT [] synonym: "p42 and p38 MAPK" EXACT [] synonym: "p42 and p38 MAP kinases" EXACT [] synonym: "p42 and p38 MAPKs" EXACT [] +synonym: "p42/44" EXACT [] xref: BEL:"MAPK Erk1/2 Family" xref: BEL:"MAPK Erk1/3 Family" xref: IP:IPR008349 @@ -3031,6 +3135,7 @@ id: FPLX:ESR name: ESR synonym: "ER" EXACT [] synonym: "ESR" EXACT [] +synonym: "hER" EXACT [] xref: BEL:"ESR Family" is_a: FPLX:root inverse_is_a: HGNC:ESR1 @@ -3188,6 +3293,13 @@ xref: HGNC_GROUP:644 xref: MESH:D025261 is_a: FPLX:root +[Term] +id: FPLX:ETNK +name: ETNK +is_a: FPLX:root +inverse_is_a: HGNC:ETNK1 +inverse_is_a: HGNC:ETNK2 + [Term] id: FPLX:ETS name: ETS @@ -4805,7 +4917,10 @@ is_a: FPLX:root [Term] id: FPLX:IKK_complex name: IKK-complex +synonym: "IkappaB kinase" EXACT [] synonym: "IKK complex" EXACT [] +synonym: "IKK" EXACT [] +synonym: "IκB kinase" EXACT [] xref: BEL:"IkappaB Kinase Complex" xref: MEDSCAN:urn:agi-complex:IKK%20complex xref: RE:R-HSA-1168621 @@ -4823,9 +4938,6 @@ has_part: HGNC:IKBKG [Term] id: FPLX:IKK_family name: IKK-family -synonym: "IkappaB kinase" EXACT [] -synonym: "IKK" EXACT [] -synonym: "IκB kinase" EXACT [] xref: BEL:"IkappaB Kinase Family" xref: NCIT:C104199 xref: NEXTPROT-FAMILY:03104 @@ -5067,6 +5179,7 @@ synonym: "JNK MAPK" EXACT [] synonym: "JNK" EXACT [] synonym: "JNK1/2" EXACT [] synonym: "JNKs" EXACT [] +synonym: "SAPK" EXACT [] xref: BEL:"MAPK JNK Family" xref: IP:IPR008351 xref: MEDSCAN:urn:agi-aopfc:0000473 @@ -5523,6 +5636,7 @@ id: FPLX:MAPK name: MAPK synonym: "MAP kinase" EXACT [] synonym: "MAP kinases" EXACT [] +synonym: "MAPK" EXACT [] synonym: "MAPKs" EXACT [] synonym: "mitogen activated protein kinase" EXACT [] synonym: "mitogen activated protein kinases" EXACT [] @@ -5560,6 +5674,44 @@ inverse_is_a: HGNC:MCM8 inverse_is_a: HGNC:MCM9 inverse_is_a: HGNC:MCMDC2 +[Term] +id: FPLX:MED +name: MED +is_a: FPLX:root +has_part: HGNC:CCNC +has_part: HGNC:CDK8 +has_part: HGNC:CDK19 +has_part: HGNC:MED1 +has_part: HGNC:MED29 +has_part: HGNC:MED27 +has_part: HGNC:MED4 +has_part: HGNC:MED24 +has_part: HGNC:MED6 +has_part: HGNC:MED7 +has_part: HGNC:MED8 +has_part: HGNC:MED9 +has_part: HGNC:MED10 +has_part: HGNC:MED11 +has_part: HGNC:MED12 +has_part: HGNC:MED12L +has_part: HGNC:MED13 +has_part: HGNC:MED13L +has_part: HGNC:MED14 +has_part: HGNC:MED15 +has_part: HGNC:MED16 +has_part: HGNC:MED17 +has_part: HGNC:MED18 +has_part: HGNC:MED19 +has_part: HGNC:MED20 +has_part: HGNC:MED21 +has_part: HGNC:MED22 +has_part: HGNC:MED23 +has_part: HGNC:MED25 +has_part: HGNC:MED26 +has_part: HGNC:MED28 +has_part: HGNC:MED30 +has_part: HGNC:MED31 + [Term] id: FPLX:MEF2 name: MEF2 @@ -5702,6 +5854,19 @@ inverse_is_a: HGNC:MMP26 inverse_is_a: HGNC:MMP27 inverse_is_a: HGNC:MMP28 +[Term] +id: FPLX:MOB +name: MOB +xref: HGNC_GROUP:647 +is_a: FPLX:root +inverse_is_a: HGNC:MOB1A +inverse_is_a: HGNC:MOB1B +inverse_is_a: HGNC:MOB2 +inverse_is_a: HGNC:MOB3A +inverse_is_a: HGNC:MOB3B +inverse_is_a: HGNC:MOB3C +inverse_is_a: HGNC:MOB4 + [Term] id: FPLX:MRPL name: MRPL @@ -5837,6 +6002,7 @@ synonym: "Myosin heavy chain" EXACT [] synonym: "myosin heavy chain" EXACT [] synonym: "Myosin heavy chains" EXACT [] synonym: "myosin heavy chains" EXACT [] +synonym: "Mhc" EXACT [] xref: BEL:"MYH Family" xref: MEDSCAN:urn:agi-protfc:myosin%20heavy%20chain is_a: FPLX:Myosin_family @@ -6068,7 +6234,7 @@ synonym: "natriuretic peptide" EXACT [] synonym: "Natriuretic Peptides" EXACT [] synonym: "Natriuretic peptides" EXACT [] synonym: "natriuretic peptides" EXACT [] -is_a: FPLX:root +is_a: FPLX:Neuropeptides inverse_is_a: HGNC:NPPA inverse_is_a: HGNC:NPPB inverse_is_a: HGNC:NPPC @@ -6126,6 +6292,76 @@ inverse_is_a: HGNC:NRXN1 inverse_is_a: HGNC:NRXN2 inverse_is_a: HGNC:NRXN3 +[Term] +id: FPLX:Neuropeptides +name: Neuropeptides +xref: HGNC_GROUP:1902 +is_a: FPLX:root +inverse_is_a: HGNC:ADCYAP1 +inverse_is_a: HGNC:ADM +inverse_is_a: HGNC:ADM2 +inverse_is_a: HGNC:AGRP +inverse_is_a: HGNC:AGT +inverse_is_a: HGNC:APLN +inverse_is_a: HGNC:AVP +inverse_is_a: HGNC:CALCA +inverse_is_a: HGNC:CALCB +inverse_is_a: HGNC:CCK +inverse_is_a: HGNC:CHGA +inverse_is_a: HGNC:CRH +inverse_is_a: FPLX:EDN +inverse_is_a: HGNC:GAL +inverse_is_a: HGNC:GALP +inverse_is_a: HGNC:GAST +inverse_is_a: HGNC:GHRH +inverse_is_a: HGNC:GHRL +inverse_is_a: HGNC:GIP +inverse_is_a: HGNC:GNRH1 +inverse_is_a: HGNC:GNRH2 +inverse_is_a: HGNC:GRP +inverse_is_a: HGNC:HCRT +inverse_is_a: HGNC:IAPP +inverse_is_a: HGNC:IGF1 +inverse_is_a: HGNC:IGF2 +inverse_is_a: HGNC:INS +inverse_is_a: HGNC:KISS1 +inverse_is_a: HGNC:KNG1 +inverse_is_a: HGNC:LEP +inverse_is_a: HGNC:MLN +inverse_is_a: HGNC:NMS +inverse_is_a: HGNC:NMU +inverse_is_a: HGNC:NPB +inverse_is_a: HGNC:NPFF +inverse_is_a: HGNC:NPS +inverse_is_a: HGNC:NPVF +inverse_is_a: HGNC:NPW +inverse_is_a: HGNC:NPY +inverse_is_a: HGNC:NTS +inverse_is_a: HGNC:OXT +inverse_is_a: HGNC:PDYN +inverse_is_a: HGNC:PENK +inverse_is_a: HGNC:PMCH +inverse_is_a: HGNC:PNOC +inverse_is_a: HGNC:POMC +inverse_is_a: HGNC:PPY +inverse_is_a: HGNC:PRL +inverse_is_a: HGNC:PRLH +inverse_is_a: HGNC:PTHLH +inverse_is_a: HGNC:PYY +inverse_is_a: HGNC:RLN1 +inverse_is_a: HGNC:RLN2 +inverse_is_a: HGNC:RLN3 +inverse_is_a: HGNC:SCT +inverse_is_a: HGNC:SST +inverse_is_a: FPLX:TAC +inverse_is_a: FPLX:Natriuretic_peptide +inverse_is_a: HGNC:TRH +inverse_is_a: HGNC:UCN +inverse_is_a: HGNC:UCN2 +inverse_is_a: HGNC:UCN3 +inverse_is_a: HGNC:UTS2 +inverse_is_a: HGNC:VIP + [Term] id: FPLX:NFAT name: NFAT @@ -7043,6 +7279,8 @@ synonym: "p38 MAPKs" EXACT [] synonym: "p38" EXACT [] synonym: "p38-MAPK" EXACT [] synonym: "p38MAPK" EXACT [] +synonym: "p-38" EXACT [] +synonym: "p38 SAPK" EXACT [] xref: BEL:"MAPK p38 Family" xref: IP:IPR008352 xref: MEDSCAN:urn:agi-aopfc:0000477 @@ -7084,6 +7322,7 @@ synonym: "P70RSK" EXACT [] synonym: "p70RSK" EXACT [] synonym: "P70S6K" EXACT [] synonym: "S6K" EXACT [] +synonym: "s6k" EXACT [] xref: BEL:"RPS6KB Family" xref: MEDSCAN:urn:agi-protfc:p70rsk is_a: FPLX:RSK @@ -7404,6 +7643,8 @@ has_part: HGNC:PDGFD id: FPLX:PDGFR name: PDGFR synonym: "PDGFR" EXACT [] +synonym: "derived growth factor" EXACT [] +synonym: "PDGF receptors" EXACT [] xref: BEL:"PDGFR Family" xref: NCIT:C17322 xref: RE:R-HSA-186769 @@ -7559,6 +7800,9 @@ synonym: "PI 3-kinases" EXACT [] synonym: "PI3-kinase" EXACT [] synonym: "PI3K" EXACT [] synonym: "PI3Kinase" EXACT [] +synonym: "phosphoinositide 3-kinase" EXACT [] +synonym: "phosphoinositide-3 kinase" EXACT [] +synonym: "Phosphoinositide 3-kinase" EXACT [] xref: BEL:"p85/p110 PI3Kinase Complex" xref: MEDSCAN:urn:agi-aopfc:0000447 xref: MEDSCAN:urn:agi-complex:prophash-285b9ff3749679e4d6266406a20973aa @@ -7590,6 +7834,15 @@ is_a: FPLX:PIK3R_I inverse_is_a: HGNC:PIK3R1 inverse_is_a: HGNC:PIK3R2 +[Term] +id: FPLX:PI4K +name: PI4K +synonym: "phosphatidylinositol 4-kinase" EXACT [] +synonym: "PI4K" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:PI4KA +inverse_is_a: HGNC:PI4KB + [Term] id: FPLX:PIK3R_I name: PIK3R-I @@ -8137,6 +8390,8 @@ synonym: "Protein kinase A catalytic subunit" EXACT [] synonym: "protein kinase A catalytic subunit" EXACT [] synonym: "Protein kinase A catalytic subunits" EXACT [] synonym: "protein kinase A catalytic subunits" EXACT [] +synonym: "cAK" EXACT [] +synonym: "PKA C-alpha" EXACT [] xref: BEL:"PRKA Family" xref: SIGNOR:SIGNOR-PF17 part_of: FPLX:PKA @@ -8390,6 +8645,8 @@ inverse_is_a: HGNC:IFT22 id: FPLX:RAC name: RAC synonym: "RAC" EXACT [] +synonym: "rac" EXACT [] +synonym: "Rac" EXACT [] xref: BEL:"RAC Family" xref: NEXTPROT-FAMILY:03066 is_a: FPLX:root @@ -8403,6 +8660,7 @@ id: FPLX:RAF name: RAF synonym: "RAF" EXACT [] synonym: "Raf" EXACT [] +synonym: "raf protein" EXACT [] xref: BEL:"RAF Family" xref: NEXTPROT-FAMILY:03114 xref: RE:R-HSA-5672708 @@ -8635,6 +8893,14 @@ inverse_is_a: HGNC:ARHGDIA inverse_is_a: HGNC:ARHGDIB inverse_is_a: HGNC:ARHGDIG +[Term] +id: FPLX:RIPK +name: RIPK +synonym: "RIPK" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:RIPK1 +inverse_is_a: HGNC:RIPK2 + [Term] id: FPLX:RLR name: RLR @@ -8743,6 +9009,35 @@ is_a: FPLX:root inverse_is_a: FPLX:P90RSK inverse_is_a: FPLX:P70S6K +[Term] +id: FPLX:RSTK +name: RSTK +is_a: FPLX:root +inverse_is_a: FPLX:RSTK1 +inverse_is_a: FPLX:RSTK2 + +[Term] +id: FPLX:RSTK1 +name: RSTK1 +is_a: FPLX:RSTK +inverse_is_a: HGNC:ACVRL1 +inverse_is_a: HGNC:ACVR1 +inverse_is_a: HGNC:ACVR1B +inverse_is_a: HGNC:ACVR1C +inverse_is_a: HGNC:BMPR1A +inverse_is_a: HGNC:BMPR1B +inverse_is_a: HGNC:TGFBR1 + +[Term] +id: FPLX:RSTK2 +name: RSTK2 +is_a: FPLX:RSTK +inverse_is_a: HGNC:ACVR2A +inverse_is_a: HGNC:ACVR2B +inverse_is_a: HGNC:AMHR2 +inverse_is_a: HGNC:BMPR2 +inverse_is_a: HGNC:TGFBR2 + [Term] id: FPLX:RTK name: RTK @@ -9185,6 +9480,16 @@ is_a: FPLX:root inverse_is_a: HGNC:SOS1 inverse_is_a: HGNC:SOS2 +[Term] +id: FPLX:SPHK +name: SPHK +synonym: "Sphingosine kinase" EXACT [] +synonym: "sphingosine kinase" EXACT [] +synonym: "SphK" EXACT [] +is_a: FPLX:root +inverse_is_a: HGNC:SPHK1 +inverse_is_a: HGNC:SPHK2 + [Term] id: FPLX:SPRED name: SPRED @@ -9210,6 +9515,7 @@ inverse_is_a: HGNC:SPRY4 id: FPLX:SRC name: SRC synonym: "SFK" EXACT [] +synonym: "SFKs" EXACT [] synonym: "Src family kinase" EXACT [] synonym: "Src family" EXACT [] synonym: "src kinases" EXACT [] @@ -9336,6 +9642,15 @@ has_part: HGNC:ACTL6A has_part: HGNC:ACTL6B has_part: HGNC:HLTF +[Term] +id: FPLX:TAC +name: TAC +xref: HGNC_GROUP:1901 +is_a: FPLX:Neuropeptides +inverse_is_a: HGNC:TAC1 +inverse_is_a: HGNC:TAC3 +inverse_is_a: HGNC:TAC4 + [Term] id: FPLX:TAOK name: TAOK @@ -9357,6 +9672,13 @@ inverse_is_a: HGNC:TAP1 inverse_is_a: HGNC:TAP2 inverse_is_a: HGNC:ABCB9 +[Term] +id: FPLX:TAT_associated_kinase +name: TAT-associated-kinase +is_a: FPLX:root +has_part: HGNC:CDK9 +has_part: HGNC:CCNT1 + [Term] id: FPLX:TCF_LEF name: TCF-LEF @@ -9544,6 +9866,12 @@ has_part: HGNC:TAF1B has_part: HGNC:TAF1C has_part: HGNC:TBP +[Term] +id: FPLX:TK +name: TK +synonym: "dTK" EXACT [] +is_a: FPLX:Deoxyribonucleoside_kinases + [Term] id: FPLX:TLR name: TLR @@ -9620,6 +9948,18 @@ inverse_is_a: HGNC:TNFRSF19 inverse_is_a: HGNC:TNFRSF21 inverse_is_a: HGNC:TNFRSF25 +[Term] +id: FPLX:TOP +name: TOP +synonym: "topoisomerase" EXACT [] +xref: HGNC_GROUP:1050 +is_a: FPLX:root +inverse_is_a: HGNC:TOP1 +inverse_is_a: HGNC:TOP1MT +inverse_is_a: FPLX:TOP2 +inverse_is_a: HGNC:TOP3A +inverse_is_a: HGNC:TOP3B + [Term] id: FPLX:TOP2 name: TOP2 @@ -9639,7 +9979,7 @@ xref: IP:IPR024946 xref: IP:IPR031660 xref: IP:IPR034157 xref: NCIT:C18434 -is_a: FPLX:root +is_a: FPLX:TOP inverse_is_a: HGNC:TOP2A inverse_is_a: HGNC:TOP2B diff --git a/export/hgnc_symbol_map.csv b/export/hgnc_symbol_map.csv index 1ffc2a969..af1ce2168 100644 --- a/export/hgnc_symbol_map.csv +++ b/export/hgnc_symbol_map.csv @@ -44,8 +44,11 @@ ACTN2,164 ACTN3,165 ACTN4,166 ACVR1,171 +ACVR1B,172 +ACVR1C,18123 ACVR2A,173 ACVR2B,174 +ACVRL1,175 ADCY1,232 ADCY10,21285 ADCY2,233 @@ -56,6 +59,7 @@ ADCY6,237 ADCY7,238 ADCY8,239 ADCY9,240 +ADCYAP1,241 ADH1A,249 ADH1B,250 ADH1C,251 @@ -65,6 +69,7 @@ ADH6,255 ADH7,256 ADHFE1,16354 ADM,259 +ADM2,28898 ADORA1,262 ADORA2A,263 ADORA2B,264 @@ -78,6 +83,8 @@ ADRA2C,283 ADRB1,285 ADRB2,286 ADRB3,288 +AGRP,330 +AGT,333 AKT1,391 AKT2,392 AKT3,393 @@ -110,6 +117,7 @@ ALG5,20266 ALG6,23157 ALG8,23161 ALG9,15672 +AMHR2,465 ANAPC1,19988 ANAPC10,24077 ANAPC11,14452 @@ -141,6 +149,7 @@ AP3D1,568 AP3S1,2013 AP3S2,571 APH1A,29509 +APLN,16665 APOA1,600 APOA2,601 APOA4,602 @@ -248,6 +257,7 @@ ATP5PD,845 ATP5PF,847 ATP5PO,850 ATP7A,869 +AVP,894 AXIN1,903 AXIN2,904 AXL,905 @@ -300,6 +310,8 @@ BIRC5,593 BIRC6,13516 BIRC7,13702 BIRC8,14878 +BLVRA,1062 +BLVRB,1063 BMI1,1066 BMP1,1067 BMP10,20869 @@ -363,6 +375,8 @@ CACNG5,1409 CACNG6,13625 CACNG7,13626 CACNG8,13628 +CALCA,1437 +CALCB,1438 CALM1,1442 CALM2,1445 CALM3,1449 @@ -413,6 +427,7 @@ CAV3,1529 CBX2,1552 CBX4,1554 CBX8,15962 +CCK,1569 CCL1,10609 CCL11,10610 CCL13,10611 @@ -583,6 +598,9 @@ CGB3,1886 CHAD,1909 CHEK1,1925 CHEK2,16627 +CHGA,1929 +CHKA,1937 +CHKB,1938 CHPF,24291 CHPF2,29270 CHRM1,1950 @@ -609,6 +627,12 @@ CHRNG,1967 CHSY1,17198 CHSY3,24293 CHUK,1974 +CKB,1991 +CKBE,1992 +CKM,1994 +CKMT1A,31736 +CKMT1B,1995 +CKMT2,1996 CLCN1,2019 CLCN2,2020 CLCN3,2021 @@ -625,6 +649,11 @@ CLIC4,13518 CLIC5,13517 CLIC6,2065 CLINT1,23186 +CLK1,2068 +CLK2,2069 +CLK3,2071 +CLK4,13659 +CLOCK,2082 CLTA,2090 CLTB,2091 CLTC,2092 @@ -679,12 +708,14 @@ CREB3L3,18855 CREB3L4,18854 CREB5,16844 CREM,2352 +CRH,2355 CRISP1,304 CRISP2,12024 CRISP3,16904 CRTC1,16062 CRTC2,27301 CRTC3,26148 +CRYBG1,356 CSGALNACT1,24290 CSGALNACT2,24292 CSNK1A1,2451 @@ -735,7 +766,11 @@ CYBB,2578 CYC1,2579 DAG1,2666 DAP3,2673 +DAPK1,2674 +DAPK2,2675 +DAPK3,2676 DBT,2698 +DCK,2704 DCN,2705 DCTN2,2712 DDR1,2730 @@ -751,12 +786,14 @@ DGKI,2855 DGKK,32395 DGKQ,2856 DGKZ,2857 +DGUOK,2858 DHH,2865 DHX58,29517 DLAT,2896 DLD,2898 DMD,2928 DNM1,2972 +DNM1L,2973 DNM2,2974 DNM3,29125 DPM1,3005 @@ -809,6 +846,14 @@ EDN1,3176 EDN2,3177 EDN3,3178 EED,3188 +EFNA1,3221 +EFNA2,3222 +EFNA3,3223 +EFNA4,3224 +EFNA5,3225 +EFNB1,3226 +EFNB2,3227 +EFNB3,3228 EGF,3229 EGFR,3236 EGR1,3238 @@ -866,6 +911,8 @@ ERCC4,3436 EREG,3443 ESR1,3467 ESR2,3468 +ETNK1,24649 +ETNK2,25575 ETS1,3488 ETS2,3489 EXOC1,30380 @@ -994,6 +1041,7 @@ GABRQ,14454 GABRR1,4090 GABRR2,4091 GABRR3,17969 +GAL,4114 GALNT1,4123 GALNT10,19873 GALNT11,19875 @@ -1014,6 +1062,8 @@ GALNT8,4130 GALNT9,4131 GALNTL5,21725 GALNTL6,33844 +GALP,24840 +GAST,4164 GATA1,4170 GATA2,4171 GATA3,4172 @@ -1033,6 +1083,9 @@ GDF3,4218 GDF5,4220 GDF6,4221 GDF7,4222 +GHRH,4265 +GHRL,18129 +GIP,4270 GJA1,4274 GJA10,16995 GJA3,4277 @@ -1096,6 +1149,8 @@ GNG7,4410 GNG8,19664 GNGT1,4411 GNGT2,4412 +GNRH1,4419 +GNRH2,4420 GP1BA,4439 GP1BB,4440 GP5,4443 @@ -1142,6 +1197,7 @@ GRM5,4597 GRM6,4598 GRM7,4599 GRM8,4600 +GRP,4605 GSK3A,4616 GSK3B,4617 GSTA1,4626 @@ -1250,6 +1306,7 @@ HCN1,4845 HCN2,4846 HCN3,19183 HCN4,16882 +HCRT,4847 HDAC1,4852 HDAC10,18128 HDAC11,19086 @@ -1311,6 +1368,7 @@ HTR3E,24005 HUS1,5309 HVCN1,28240 HYOU1,16931 +IAPP,5329 IFIH1,18873 IFNA1,5417 IFNA10,5418 @@ -1331,7 +1389,9 @@ IFNGR2,5440 IFNK,21714 IFNW1,5448 IFT22,21895 +IGF1,5464 IGF1R,5465 +IGF2,5466 IGFBP1,5469 IGFBP2,5471 IGFBP3,5472 @@ -1504,6 +1564,7 @@ KIF9,16666 KIFC1,6389 KIFC2,29530 KIFC3,6326 +KISS1,6341 KLK1,6357 KLK10,6358 KLK11,6359 @@ -1520,6 +1581,7 @@ KLK7,6368 KLK8,6369 KLK9,6370 KLKB1,6371 +KNG1,6383 KRAS,6407 KSR1,6465 KSR2,18610 @@ -1536,6 +1598,7 @@ LDHA,6535 LDHB,6541 LDHC,6544 LEF1,6551 +LEP,6553 LFNG,6560 LHB,6584 LPAR1,3166 @@ -1611,12 +1674,35 @@ MCOLN1,13356 MCOLN2,13357 MCOLN3,13358 MED1,9234 +MED10,28760 +MED11,32687 +MED12,11957 +MED12L,16050 +MED13,22474 +MED13L,22962 MED14,2370 +MED15,14248 +MED16,17556 MED17,2375 +MED18,25944 +MED19,29600 +MED20,16840 +MED21,11473 +MED22,11477 MED23,2372 +MED24,22963 +MED25,28845 MED26,2376 MED27,2377 +MED28,24628 +MED29,23074 +MED30,23032 +MED31,24260 +MED4,17903 +MED6,19970 MED7,2378 +MED8,19971 +MED9,25487 MEF2A,6993 MEF2B,6995 MEF2C,6996 @@ -1643,6 +1729,7 @@ MKI67,7107 MKNK1,7110 MKNK2,7111 MKX,23729 +MLN,7141 MLST8,24825 MMP1,7155 MMP10,7156 @@ -1667,6 +1754,13 @@ MMP3,7173 MMP7,7174 MMP8,7175 MMP9,7176 +MOB1A,16015 +MOB1B,29801 +MOB2,24904 +MOB3A,29802 +MOB3B,23825 +MOB3C,29800 +MOB4,17261 MRPL1,14275 MRPL10,14055 MRPL11,14042 @@ -1899,6 +1993,8 @@ NFYB,7805 NFYC,7806 NKD1,17045 NKD2,17046 +NMS,32203 +NMU,7859 NOS1,7872 NOS2,7873 NOS3,7876 @@ -1910,8 +2006,10 @@ NOX1,7889 NOX3,7890 NOX4,7891 NOX5,14874 +NPB,30099 NPBWR1,4522 NPBWR2,4530 +NPFF,7901 NPFFR1,17425 NPFFR2,4525 NPPA,7939 @@ -1919,7 +2017,11 @@ NPPB,7940 NPPC,7941 NPR1,7943 NPR2,7944 +NPS,33940 NPSR1,23631 +NPVF,13782 +NPW,30509 +NPY,7955 NPY1R,7956 NPY2R,7957 NPY4R,9329 @@ -1939,6 +2041,7 @@ NRXN3,8010 NTRK1,8031 NTRK2,8032 NTRK3,8033 +NTS,8038 NYX,8082 OGN,8126 OGT,8127 @@ -2353,6 +2456,7 @@ OR9I1,14718 OR9K2,15339 OR9Q1,14724 OR9Q2,15328 +OXT,8528 P2RX1,8533 P2RX2,15459 P2RX3,8534 @@ -2439,6 +2543,8 @@ PDK1,8809 PDK2,8810 PDK3,8811 PDK4,8812 +PDYN,8820 +PENK,8831 PF4,8861 PFN1,8881 PFN2,8882 @@ -2454,6 +2560,8 @@ PHKA2,8926 PHKB,8927 PHKG1,8930 PHKG2,8931 +PI4KA,8983 +PI4KB,8984 PIGA,8957 PIGB,8959 PIGK,8965 @@ -2518,6 +2626,8 @@ PLD6,30447 PLPP1,9228 PLPP2,9230 PLPP3,9229 +PMCH,9109 +PNOC,9163 PODN,23174 PODNL1,26275 POFUT1,14988 @@ -2546,6 +2656,7 @@ POLR2J,9197 POLR2J2,23208 POLR2K,9198 POLR2L,9199 +POMC,9201 POMGNT1,19139 POMGNT2,25902 POMT1,9202 @@ -2621,6 +2732,7 @@ PPP3CC,9316 PPP3R1,9317 PPP3R2,9318 PPWD1,28954 +PPY,9327 PRDX1,9352 PRDX2,9353 PRDX3,9354 @@ -2654,6 +2766,8 @@ PRKCZ,9412 PRKD3,9408 PRKG1,9414 PRKG2,9416 +PRL,9445 +PRLH,17945 PRTN3,9495 PSEN1,9508 PSEN2,9509 @@ -2706,11 +2820,13 @@ PTGER1,9593 PTGER2,9594 PTGER3,9595 PTGER4,9596 +PTHLH,9607 PTPA,9308 PTX3,9692 PYGB,9723 PYGL,9725 PYGM,9726 +PYY,9748 RAB10,9759 RAB11A,9760 RAB11B,9761 @@ -2844,7 +2960,13 @@ RHOC,669 RHOG,672 RICTOR,28611 RING1,10018 +RIPK1,10019 +RIPK2,10020 +RLN1,10026 +RLN2,10027 +RLN3,17135 RNF2,10061 +RNH1,10074 ROBO1,10249 ROBO2,10250 ROBO3,13433 @@ -2922,6 +3044,7 @@ SCNN1A,10599 SCNN1B,10600 SCNN1D,10601 SCNN1G,10602 +SCT,10607 SDHA,10680 SDHB,10681 SDHC,10682 @@ -2977,6 +3100,7 @@ SLC2A6,11011 SLC2A7,13445 SLC2A8,13812 SLC2A9,13446 +SLK,11088 SLX4,23845 SMAD1,6767 SMAD2,6768 @@ -3016,6 +3140,7 @@ SOD3,11181 SOS1,11187 SOS2,11188 SPHK1,11240 +SPHK2,18859 SPRED1,20249 SPRED2,17722 SPRED3,31041 @@ -3027,6 +3152,7 @@ SRC,11283 SREBF1,11289 SREBF2,11290 SSPN,11322 +SST,11329 ST3GAL1,10862 ST3GAL2,10863 ST3GAL3,10866 @@ -3056,11 +3182,16 @@ STAT4,11365 STAT5A,11366 STAT5B,11367 STAT6,11368 +STK17A,11395 +STK17B,11396 STT3A,6172 STT3B,30611 SUGT1,16987 SUMO3,11124 SUZ12,17101 +TAC1,11517 +TAC3,11521 +TAC4,16641 TAF1A,11532 TAF1B,11533 TAF1C,11534 @@ -3095,6 +3226,7 @@ TGFB3,11769 TGFBR1,11772 TGFBR2,11773 TGFBR3,11774 +THAP12,9440 THBS1,11785 THBS2,11786 THBS3,11787 @@ -3104,6 +3236,8 @@ THRB,11799 TIAM1,11805 TIAM2,11806 TIPARP,23696 +TK1,11830 +TK2,11831 TLR1,11847 TLR10,15634 TLR2,11848 @@ -3148,8 +3282,12 @@ TNNT2,11949 TNNT3,11950 TNR,11953 TNXB,11976 +TOP1,11986 +TOP1MT,29787 TOP2A,11989 TOP2B,11990 +TOP3A,11992 +TOP3B,11993 TP53,11998 TP63,15979 TP73,12003 @@ -3164,6 +3302,7 @@ TRAP1,16264 TRB,12155 TRD,12252 TRG,12271 +TRH,12298 TRIM23,660 TRPA1,497 TRPC1,12333 @@ -3247,6 +3386,9 @@ UBE2T,25009 UBE2V1,12494 UBE2V2,12495 UBE2W,25616 +UCN,12516 +UCN2,18414 +UCN3,17781 UGCG,12524 UGGT1,15663 UGGT2,15664 @@ -3292,6 +3434,7 @@ UQCRH,12590 UQCRQ,29594 USP5,12628 UTRN,12635 +UTS2,12636 VAV1,12657 VAV2,12658 VAV3,12659 @@ -3302,6 +3445,7 @@ VEGFA,12680 VEGFB,12681 VEGFC,12682 VEGFD,3708 +VIP,12693 VPS51,1172 VPS52,10518 VPS53,25608 @@ -3345,5 +3489,6 @@ YWHAQ,12854 YWHAZ,12855 YY1,12856 ZACN,29504 +ZAP70,12858 ZNF134,12918 ZW10,13194 diff --git a/grounding_map.csv b/grounding_map.csv index f7679498d..a6252873e 100644 --- a/grounding_map.csv +++ b/grounding_map.csv @@ -438,17 +438,17 @@ calcium channel,FPLX,Calcium_channels,,,, calcium channels,FPLX,Calcium_channels,,,, Calmodulin,FPLX,CALM,,,, calmodulin,FPLX,CALM,,,, -calmodulindependent kinase II,FPLX,CAMK2_family,,,, +calmodulindependent kinase II,FPLX,CAMK2_complex,,,, calpain,FPLX,CAPN,,,, CaM kinase II,FPLX,CAMK2_complex,,,, CaM,FPLX,CALM,,,, CaMK family,FPLX,CAMK,,,, CaMK II,FPLX,CAMK2_complex,,,, CaMK,FPLX,CAMK,,,, -CAMK2,FPLX,CAMK2_family,,,, -CaMK2,FPLX,CAMK2_family,,,, +CAMK2,FPLX,CAMK2_complex,,,, +CaMK2,FPLX,CAMK2_complex,,,, CaMKII,FPLX,CAMK2_complex,,,, -CAMKII,FPLX,CAMK2_family,,,, +CAMKII,FPLX,CAMK2_complex,,,, cAMP,PUBCHEM,6076,CHEBI,CHEBI:17489,HMDB,HMDB00058 cAMP-dependent PK,FPLX,PKA,,,, cAMP-dependent protein kinase,FPLX,PKA,,,, @@ -576,7 +576,6 @@ CIP2A,UP,Q8TCG1,,,, Cisplatin,CHEBI,CHEBI:27899,PUBCHEM,441203,, cisplatin,CHEBI,CHEBI:27899,PUBCHEM,441203,, CK2,FPLX,CK2,,,, -CKI,FPLX,CDKN,,,, Clade B serpin,FPLX,SERPINB,,,, clade B serpins,FPLX,SERPINB,,,, Class 1 NF-kappaBs,FPLX,NFkappaB_1,,,, @@ -1197,7 +1196,7 @@ hTERT,UP,O14746,,,, HuR,HGNC,ELAVL1,UP,Q15717,, hydrogen peroxide,PUBCHEM,784,CHEBI,CHEBI:16240,, hypoxia-inducible factors,FPLX,HIF,,,, -I/R,MESH,D011839,,,, +I/R,MESH,D015427,,,, ICAM-1,UP,P05362,,,, IER3,UP,P46695,,,, IFI16,UP,Q16666,,,, @@ -1227,13 +1226,13 @@ IGF1,UP,P05019,,,, IGF1R,UP,P08069,,,, IGFBP,FPLX,IGFBP,,,, IGFBPs,FPLX,IGFBP,,,, -IkappaB kinase,FPLX,IKK_family,,,, +IkappaB kinase,FPLX,IKK_complex,,,, IkappaB,FPLX,IKB,,,, IkappaB-alpha,HGNC,NFKBIA,,,, IkappaBalpha,UP,P25963,,,, IK1,FPLX,KCNJ,,,, IKK complex,FPLX,IKK_complex,,,, -IKK,FPLX,IKK_family,,,, +IKK,FPLX,IKK_complex,,,, IKKalpha,UP,O15111,,,, IKKbeta,UP,O14920,,,, IKKβ,UP,O14920,,,, @@ -1308,7 +1307,7 @@ IRS1,UP,P35568,,,, IRS2,UP,Q9Y4H2,,,, ischemia,MESH,D007511,,,, isoflurane,PUBCHEM,3763,CHEBI,CHEBI:6015,, -IκB kinase,FPLX,IKK_family,,,, +IκB kinase,FPLX,IKK_complex,,,, IκB,FPLX,IKB,,,, IκB-α,HGNC,NFKBIA,,,, IκBα,UP,P25963,,,, @@ -1403,7 +1402,7 @@ MAP3K2,UP,Q9Y2U5,,,, MAPK kinase kinase,FPLX,MAP3K,,,, MAPK kinase,FPLX,MAP2K,,,, MAPK p38,FPLX,p38,,,, -MAPK,FPLX,ERK,,,, +MAPK,FPLX,MAPK,,,, MAPK1,UP,P28482,,,, MAPK3,UP,P27361,,,, MAPKK kinases,FPLX,MAP3K,,,, @@ -2248,6 +2247,7 @@ senescence,GO,GO:0090398,MESH,D016922,, SERCA,FPLX,SERCA,,,, SERCAs,FPLX,SERCA,,,, SFK,FPLX,SRC,,,, +SFKs,FPLX,SRC,,,, SFN,CHEBI,CHEBI:47807,PUBCHEM,5350,, Shc family,FPLX,SHC,,,, SHC,FPLX,SHC,,,, @@ -2321,6 +2321,7 @@ Src family,FPLX,SRC,,,, src kinases,FPLX,SRC,,,, SRC,UP,P12931,,,, Src,UP,P12931,,,, +Src kinase,UP,P12931,,,, SRC-family kinases,FPLX,SRC,,,, Src-kinases,FPLX,SRC,,,, SREBF family,FPLX,SREBF,,,, @@ -2689,7 +2690,7 @@ MNK,HGNC,ATP7A,,,, Mnk,HGNC,ATP7A,,,, MNK,FPLX,MKNK,,,, Mnk,FPLX,MKNK,,,, -CaM serine/threonine kinase II,FPLX,CAMK2_family,,,, +CaM serine/threonine kinase II,FPLX,CAMK2_complex,,,, PCTAIRE,HGNC,CDK16,,,, SLE,MESH,D008180,,,, NIK,HGNC,MAP3K14,,,, @@ -2701,6 +2702,7 @@ p42(mapk) and p44(mapk),FPLX,ERK,,,, p42 and p38 MAPK,FPLX,ERK,,,, p42 and p38 MAP kinases,FPLX,ERK,,,, p42 and p38 MAPKs,FPLX,ERK,,,, +p42/44,FPLX,ERK,,,, thiazolidinediones,MESH,D045162,CHEBI,CHEBI:50990,, TRAP,UP,P16893,,,, ERK4,HGNC,MAPK4,,,, @@ -2737,3 +2739,125 @@ neuropeptide FF receptor,FPLX,NPFFR,,,, neuropeptide FF receptors,FPLX,NPFFR,,,, neuropeptide Y receptor,FPLX,NPYR,,,, neuropeptide Y receptors,FPLX,NPYR,,,, +creatine,CHEBI,CHEBI:16919,,,, +SAPK,FPLX,JNK,,,, +s6k,FPLX,P70S6K,,,, +growth factor receptor,NCIT,C17664,,,, +growth factor receptors,NCIT,C17664,,,, +derived growth factor,FPLX,PDGFR,,,, +PDGF receptors,FPLX,PDGFR,,,, +creatine kinase,FPLX,Creatine_kinase,,,, +ephrin,FPLX,EFN,,,, +ephrins,FPLX,EFN,,,, +phosphatidylinositol 4-kinase,FPLX,PI4K,,,, +PI4K,FPLX,PI4K,,,, +DAPK,FPLX,DAPK,,,, +DAPk,FPLX,DAPK,,,, +Sphingosine kinase,FPLX,SPHK,,,, +sphingosine kinase,FPLX,SPHK,,,, +SphK,FPLX,SPHK,,,, +SAT,MESH,D050151,,,, +topoisomerase,FPLX,TOP,,,, +AIM1,HGNC,CRYBG1,,,, +Clk,HGNC,CLOCK,,,, +TraD,UP,P09130,,,, +SK2,HGNC,KCNN2,,,, +AMP-activated,FPLX,AMPK,,,, +oxidant,MESH,D016877,,,, +Ste20,UP,Q03497,,,, +Ste20-like kinase,HGNC,SLK,,,, +chk,FPLX,CHK,,,, +ethanolamine kinase,FPLX,CHK,,,, +Chaetoglobosin K,PUBCHEM,5477706,,,, +CKIs,FPLX,CDKN,,,, +choline kinase,FPLX,CHK,,,, +EphB receptor,FPLX,EPHB,,,, +p-38,FPLX,p38,,,, +p38 SAPK,FPLX,p38,,,, +GPR,IP,IPR000965,,,, +BVR,FPLX,BLVR,,,, +Ir,CHEBI,CHEBI:49666,,,, +Hep,CHEBI,CHEBI:28304,,,, +phosphoinositide 3-kinase,FPLX,PI3K,,,, +I-R,MESH,D015427,,,, +aura,MESH,D020325,,,, +CCK-4,CHEBI,CHEBI:137728,,,, +Ach,CHEBI,CHEBI:15355,,,, +BcR,MESH,D011947,,,, +cAK,FPLX,PRKAC,,,, +Drp-1,HGNC,DNM1L,,,, +phosphoinositide-3 kinase,FPLX,PI3K,,,, +brk,UP,Q9XTN4,,,, +Ischemia-reperfusion,MESH,D015427,,,, +Phosphoinositide 3-kinase,FPLX,PI3K,,,, +rSK2,HGNC,KCNN2,,,, +Dgk,FPLX,DGK,,,, +AcH,CHEBI,CHEBI:15343,,,, +dCAF-1,UP,Q24572,,,, +hRI,HGNC,RNH1,,,, +Mhc,FPLX,MYH,,,, +Cdkn1,FPLX,CDKN1,,,, +cerebral ischemia-reperfusion,MESH,D015427,,,, +Iterative reconstruction,NCIT,C94918,,,, +raf protein,FPLX,RAF,,,, +biochemical recurrence,NCIT,C93229,,,, +Bsk,UP,P92208,,,, +StAR,HGNC,STAR,,,, +StaR,HGNC,STAR,,,, +STAR,HGNC,STAR,,,, +Star,HGNC,STAR,,,, +pLK,CHEBI,CHEBI:53412,,,, +tyrosine kinase receptor,MESH,D020794,,,, +rSK1,HGNC,KCNN1,,,, +glycogen,CHEBI,CHEBI:28087,,,, +mK3,UP,O41933,,,, +deoxycytidine,CHEBI,CHEBI:15698,,,, +SP600125,CHEBI,CHEBI:90695,,,, +p94,HGNC,CAPN3,,,, +ros1,UP,Q9SJQ6,,,, +Frp1,UP,Q6B957,,,, +FRP-1,MESH,D027261,,,, +Nak,UP,Q9U485,,,, +hK4,HGNC,KLK4,,,, +NprB,UP,A0A0J6R5F8,,,, +gK,UP,P68331,,,, +CAMK-II,FPLX,CAMK2_complex,,,, +dTK,FPLX,TK,,,, +PKA C-alpha,FPLX,PRKAC,,,, +rac,FPLX,RAC,,,, +SRC-1,HGNC,NCOA1,,,, +CaMKII protein,FPLX,CAMK2_complex,,,, +her4,UP,Q90466,,,, +Ert1,UP,P38140,,,, +galK,UP,P0A6T3,,,, +rIPK,HGNC,THAP12,,,, +hER,FPLX,ESR,,,, +Rac,FPLX,RAC,,,, +endoribonuclease,NCIT,C25959,,,, +nprB,UP,A0A0J6R5F8,,,, +SRC1,HGNC,NCOA1,,,, +Src-homology,MESH,D018909,,,, +Src-1,HGNC,NCOA1,,,, +CAMK,FPLX,CAMK,,,, +RIPK,FPLX,RIPK,,,, +CAM-KII,FPLX,CAMK2_complex,,,, +p-CaMKII,FPLX,CAMK2_complex,,,, +CaMK-II,FPLX,CAMK2_complex,,,, +RAc,CHEBI,CHEBI:17336,,,, +ZAP-70,HGNC,ZAP70,,,, +GCa,MESH,D013274,,,, +ssk1,UP,Q07084,,,, +CK-I,FPLX,CSNK1,,,, +Chkl,HGNC,CHEK1,,,, +pEK,HGNC,PENK,,,, +SEK,HGNC,MAP2K4,,,, +neutrophils,MESH,D009504,,,, +Neutrophils,MESH,D009504,,,, +Ly49D,UP,Q60651,,,, +NF-kappaB-inducing kinase,HGNC,MAP3K14,,,, +p38b,HGNC,MAPK11,,,, +cSBP,MESH,D001794,,,, +pfkA,UP,P0A796,,,, +Pka1,UP,P06244,,,, +uridine,CHEBI,CHEBI:16704,HMDB,HMDB0000296,, +Uridine,CHEBI,CHEBI:16704,HMDB,HMDB0000296,, diff --git a/import/hgnc_families.py b/import/hgnc_families.py index 700ed8234..f9551c00a 100644 --- a/import/hgnc_families.py +++ b/import/hgnc_families.py @@ -88,18 +88,17 @@ def get_relations_from_root(root_id, relations=None): child_ids = children.get(root_id) famplex_id = get_famplex_id(family_info) # In this case this HGNC family has genes as its children - if not child_ids: - gene_members = family_to_gene[root_id] - for gene in gene_members: - gene_name = hgnc_client.get_hgnc_name(gene) - if is_pseudogene(gene_name): - print('Assuming %s is a pseudogene, skipping' % gene_name) - continue - rel = ('HGNC', gene_name, 'isa', 'FPLX', famplex_id, root_id) - relations.append(rel) + gene_members = family_to_gene[root_id] + for gene in gene_members: + gene_name = hgnc_client.get_hgnc_name(gene) + if is_pseudogene(gene_name): + print('Assuming %s is a pseudogene, skipping' % gene_name) + continue + rel = ('HGNC', gene_name, 'isa', 'FPLX', famplex_id, root_id) + relations.append(rel) # In this case this HGNC family is an intermediate that has further # families as its children - else: + if child_ids is not None: for child_id in child_ids: # We want to skip families that only consist of a single gene, # and therefore these genes are directly linked to their diff --git a/relations.csv b/relations.csv index ebf95a045..10235375d 100644 --- a/relations.csv +++ b/relations.csv @@ -1097,9 +1097,6 @@ HGNC,E2F5,isa,FPLX,E2F HGNC,E2F6,isa,FPLX,E2F HGNC,E2F7,isa,FPLX,E2F HGNC,E2F8,isa,FPLX,E2F -HGNC,EDN1,isa,FPLX,EDN -HGNC,EDN2,isa,FPLX,EDN -HGNC,EDN3,isa,FPLX,EDN HGNC,AREG,isa,FPLX,EGFR_ligand HGNC,EGF,isa,FPLX,EGFR_ligand HGNC,TGFA,isa,FPLX,EGFR_ligand @@ -1133,20 +1130,22 @@ HGNC,ENO1,isa,FPLX,ENO HGNC,ENO2,isa,FPLX,ENO HGNC,ENO3,isa,FPLX,ENO HGNC,ENO4,isa,FPLX,ENO -HGNC,EPHA1,isa,FPLX,Ephrin_receptor -HGNC,EPHA2,isa,FPLX,Ephrin_receptor -HGNC,EPHA3,isa,FPLX,Ephrin_receptor -HGNC,EPHA4,isa,FPLX,Ephrin_receptor -HGNC,EPHA5,isa,FPLX,Ephrin_receptor -HGNC,EPHA6,isa,FPLX,Ephrin_receptor -HGNC,EPHA7,isa,FPLX,Ephrin_receptor -HGNC,EPHA8,isa,FPLX,Ephrin_receptor -HGNC,EPHB1,isa,FPLX,Ephrin_receptor -HGNC,EPHB2,isa,FPLX,Ephrin_receptor -HGNC,EPHB3,isa,FPLX,Ephrin_receptor -HGNC,EPHB4,isa,FPLX,Ephrin_receptor -HGNC,EPHB6,isa,FPLX,Ephrin_receptor -HGNC,EPHA10,isa,FPLX,Ephrin_receptor +HGNC,EPHA1,isa,FPLX,EPHA +HGNC,EPHA2,isa,FPLX,EPHA +HGNC,EPHA3,isa,FPLX,EPHA +HGNC,EPHA4,isa,FPLX,EPHA +HGNC,EPHA5,isa,FPLX,EPHA +HGNC,EPHA6,isa,FPLX,EPHA +HGNC,EPHA7,isa,FPLX,EPHA +HGNC,EPHA8,isa,FPLX,EPHA +HGNC,EPHA10,isa,FPLX,EPHA +HGNC,EPHB1,isa,FPLX,EPHB +HGNC,EPHB2,isa,FPLX,EPHB +HGNC,EPHB3,isa,FPLX,EPHB +HGNC,EPHB4,isa,FPLX,EPHB +HGNC,EPHB6,isa,FPLX,EPHB +FPLX,EPHA,isa,FPLX,Ephrin_receptor +FPLX,EPHB,isa,FPLX,Ephrin_receptor HGNC,EPN1,isa,FPLX,EPN HGNC,EPN2,isa,FPLX,EPN HGNC,EPN3,isa,FPLX,EPN @@ -3725,3 +3724,174 @@ HGNC,VPS51,partof,FPLX,GARP HGNC,VPS52,partof,FPLX,GARP HGNC,VPS53,partof,FPLX,GARP HGNC,VPS54,partof,FPLX,GARP +HGNC,CCNC,partof,FPLX,MED +HGNC,CDK8,partof,FPLX,MED +HGNC,CDK19,partof,FPLX,MED +HGNC,MED1,partof,FPLX,MED +HGNC,MED29,partof,FPLX,MED +HGNC,MED27,partof,FPLX,MED +HGNC,MED4,partof,FPLX,MED +HGNC,MED24,partof,FPLX,MED +HGNC,MED6,partof,FPLX,MED +HGNC,MED7,partof,FPLX,MED +HGNC,MED8,partof,FPLX,MED +HGNC,MED9,partof,FPLX,MED +HGNC,MED10,partof,FPLX,MED +HGNC,MED11,partof,FPLX,MED +HGNC,MED12,partof,FPLX,MED +HGNC,MED12L,partof,FPLX,MED +HGNC,MED13,partof,FPLX,MED +HGNC,MED13L,partof,FPLX,MED +HGNC,MED14,partof,FPLX,MED +HGNC,MED15,partof,FPLX,MED +HGNC,MED16,partof,FPLX,MED +HGNC,MED17,partof,FPLX,MED +HGNC,MED18,partof,FPLX,MED +HGNC,MED19,partof,FPLX,MED +HGNC,MED20,partof,FPLX,MED +HGNC,MED21,partof,FPLX,MED +HGNC,MED22,partof,FPLX,MED +HGNC,MED23,partof,FPLX,MED +HGNC,MED25,partof,FPLX,MED +HGNC,MED26,partof,FPLX,MED +HGNC,MED28,partof,FPLX,MED +HGNC,MED30,partof,FPLX,MED +HGNC,MED31,partof,FPLX,MED +FPLX,RSTK1,isa,FPLX,RSTK +FPLX,RSTK2,isa,FPLX,RSTK +HGNC,ACVRL1,isa,FPLX,RSTK1 +HGNC,ACVR1,isa,FPLX,RSTK1 +HGNC,ACVR1B,isa,FPLX,RSTK1 +HGNC,ACVR1C,isa,FPLX,RSTK1 +HGNC,BMPR1A,isa,FPLX,RSTK1 +HGNC,BMPR1B,isa,FPLX,RSTK1 +HGNC,TGFBR1,isa,FPLX,RSTK1 +HGNC,ACVR2A,isa,FPLX,RSTK2 +HGNC,ACVR2B,isa,FPLX,RSTK2 +HGNC,AMHR2,isa,FPLX,RSTK2 +HGNC,BMPR2,isa,FPLX,RSTK2 +HGNC,TGFBR2,isa,FPLX,RSTK2 +HGNC,CDK9,partof,FPLX,TAT_associated_kinase +HGNC,CCNT1,partof,FPLX,TAT_associated_kinase +HGNC,CKB,isa,FPLX,Creatine_kinase +HGNC,CKBE,isa,FPLX,Creatine_kinase +HGNC,CKM,isa,FPLX,Creatine_kinase +HGNC,CKMT1A,isa,FPLX,Creatine_kinase +HGNC,CKMT1B,isa,FPLX,Creatine_kinase +HGNC,CKMT2,isa,FPLX,Creatine_kinase +HGNC,EFNA1,isa,FPLX,EFN +HGNC,EFNA2,isa,FPLX,EFN +HGNC,EFNA3,isa,FPLX,EFN +HGNC,EFNA4,isa,FPLX,EFN +HGNC,EFNA5,isa,FPLX,EFN +HGNC,EFNB1,isa,FPLX,EFN +HGNC,EFNB2,isa,FPLX,EFN +HGNC,EFNB3,isa,FPLX,EFN +HGNC,PI4KA,isa,FPLX,PI4K +HGNC,PI4KB,isa,FPLX,PI4K +HGNC,DAPK1,isa,FPLX,DAPK +HGNC,DAPK2,isa,FPLX,DAPK +HGNC,DAPK3,isa,FPLX,DAPK +HGNC,STK17A,isa,FPLX,DAPK +HGNC,STK17B,isa,FPLX,DAPK +HGNC,MOB1A,isa,FPLX,MOB +HGNC,MOB1B,isa,FPLX,MOB +HGNC,MOB2,isa,FPLX,MOB +HGNC,MOB3A,isa,FPLX,MOB +HGNC,MOB3B,isa,FPLX,MOB +HGNC,MOB3C,isa,FPLX,MOB +HGNC,MOB4,isa,FPLX,MOB +HGNC,SPHK1,isa,FPLX,SPHK +HGNC,SPHK2,isa,FPLX,SPHK +HGNC,TOP1,isa,FPLX,TOP +HGNC,TOP1MT,isa,FPLX,TOP +FPLX,TOP2,isa,FPLX,TOP +HGNC,TOP3A,isa,FPLX,TOP +HGNC,TOP3B,isa,FPLX,TOP +HGNC,CHKA,isa,FPLX,CHK +HGNC,CHKB,isa,FPLX,CHK +HGNC,EDN1,isa,FPLX,EDN +HGNC,EDN2,isa,FPLX,EDN +HGNC,EDN3,isa,FPLX,EDN +HGNC,ADCYAP1,isa,FPLX,Neuropeptides +HGNC,ADM,isa,FPLX,Neuropeptides +HGNC,ADM2,isa,FPLX,Neuropeptides +HGNC,AGRP,isa,FPLX,Neuropeptides +HGNC,AGT,isa,FPLX,Neuropeptides +HGNC,APLN,isa,FPLX,Neuropeptides +HGNC,AVP,isa,FPLX,Neuropeptides +HGNC,CALCA,isa,FPLX,Neuropeptides +HGNC,CALCB,isa,FPLX,Neuropeptides +HGNC,CCK,isa,FPLX,Neuropeptides +HGNC,CHGA,isa,FPLX,Neuropeptides +HGNC,CRH,isa,FPLX,Neuropeptides +FPLX,EDN,isa,FPLX,Neuropeptides +HGNC,GAL,isa,FPLX,Neuropeptides +HGNC,GALP,isa,FPLX,Neuropeptides +HGNC,GAST,isa,FPLX,Neuropeptides +HGNC,GHRH,isa,FPLX,Neuropeptides +HGNC,GHRL,isa,FPLX,Neuropeptides +HGNC,GIP,isa,FPLX,Neuropeptides +HGNC,GNRH1,isa,FPLX,Neuropeptides +HGNC,GNRH2,isa,FPLX,Neuropeptides +HGNC,GRP,isa,FPLX,Neuropeptides +HGNC,HCRT,isa,FPLX,Neuropeptides +HGNC,IAPP,isa,FPLX,Neuropeptides +HGNC,IGF1,isa,FPLX,Neuropeptides +HGNC,IGF2,isa,FPLX,Neuropeptides +HGNC,INS,isa,FPLX,Neuropeptides +HGNC,KISS1,isa,FPLX,Neuropeptides +HGNC,KNG1,isa,FPLX,Neuropeptides +HGNC,LEP,isa,FPLX,Neuropeptides +HGNC,MLN,isa,FPLX,Neuropeptides +HGNC,NMS,isa,FPLX,Neuropeptides +HGNC,NMU,isa,FPLX,Neuropeptides +HGNC,NPB,isa,FPLX,Neuropeptides +HGNC,NPFF,isa,FPLX,Neuropeptides +HGNC,NPS,isa,FPLX,Neuropeptides +HGNC,NPVF,isa,FPLX,Neuropeptides +HGNC,NPW,isa,FPLX,Neuropeptides +HGNC,NPY,isa,FPLX,Neuropeptides +HGNC,NTS,isa,FPLX,Neuropeptides +HGNC,OXT,isa,FPLX,Neuropeptides +HGNC,PDYN,isa,FPLX,Neuropeptides +HGNC,PENK,isa,FPLX,Neuropeptides +HGNC,PMCH,isa,FPLX,Neuropeptides +HGNC,PNOC,isa,FPLX,Neuropeptides +HGNC,POMC,isa,FPLX,Neuropeptides +HGNC,PPY,isa,FPLX,Neuropeptides +HGNC,PRL,isa,FPLX,Neuropeptides +HGNC,PRLH,isa,FPLX,Neuropeptides +HGNC,PTHLH,isa,FPLX,Neuropeptides +HGNC,PYY,isa,FPLX,Neuropeptides +HGNC,RLN1,isa,FPLX,Neuropeptides +HGNC,RLN2,isa,FPLX,Neuropeptides +HGNC,RLN3,isa,FPLX,Neuropeptides +HGNC,SCT,isa,FPLX,Neuropeptides +HGNC,SST,isa,FPLX,Neuropeptides +FPLX,TAC,isa,FPLX,Neuropeptides +FPLX,Natriuretic_peptide,isa,FPLX,Neuropeptides +HGNC,TRH,isa,FPLX,Neuropeptides +HGNC,UCN,isa,FPLX,Neuropeptides +HGNC,UCN2,isa,FPLX,Neuropeptides +HGNC,UCN3,isa,FPLX,Neuropeptides +HGNC,UTS2,isa,FPLX,Neuropeptides +HGNC,VIP,isa,FPLX,Neuropeptides +HGNC,TAC1,isa,FPLX,TAC +HGNC,TAC3,isa,FPLX,TAC +HGNC,TAC4,isa,FPLX,TAC +HGNC,ETNK1,isa,FPLX,ETNK +HGNC,ETNK2,isa,FPLX,ETNK +HGNC,CLK1,isa,FPLX,CLK +HGNC,CLK2,isa,FPLX,CLK +HGNC,CLK3,isa,FPLX,CLK +HGNC,CLK4,isa,FPLX,CLK +HGNC,BLVRA,isa,FPLX,BLVR +HGNC,BLVRB,isa,FPLX,BLVR 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