|
| 1 | +{ |
| 2 | + "cells": [ |
| 3 | + { |
| 4 | + "cell_type": "markdown", |
| 5 | + "metadata": {}, |
| 6 | + "source": [ |
| 7 | + "<a href=\"https://colab.research.google.com/github/joanby/python-ml-course/blob/master/notebooks/T10%20-%202%20-%20Analisis%20de%20Componentes%20Principales%20SK%20Learn-Colab.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>" |
| 8 | + ] |
| 9 | + }, |
| 10 | + { |
| 11 | + "cell_type": "markdown", |
| 12 | + "metadata": {}, |
| 13 | + "source": [ |
| 14 | + "# Análisis de Componentes Principales - SkLearn\n" |
| 15 | + ] |
| 16 | + }, |
| 17 | + { |
| 18 | + "cell_type": "code", |
| 19 | + "execution_count": 6, |
| 20 | + "metadata": {}, |
| 21 | + "outputs": [], |
| 22 | + "source": [ |
| 23 | + "import pandas as pd\n", |
| 24 | + "\n", |
| 25 | + "import plotly.plotly as py\n", |
| 26 | + "from plotly.graph_objs import * \n", |
| 27 | + "import plotly.tools as tls\n", |
| 28 | + "\n", |
| 29 | + "from sklearn.preprocessing import StandardScaler\n", |
| 30 | + "\n", |
| 31 | + "tls.set_credentials_file(username='JuanGabriel', api_key='6mEfSXf8XNyIzpxwb8z7')" |
| 32 | + ] |
| 33 | + }, |
| 34 | + { |
| 35 | + "cell_type": "code", |
| 36 | + "execution_count": 7, |
| 37 | + "metadata": {}, |
| 38 | + "outputs": [], |
| 39 | + "source": [ |
| 40 | + "df = pd.read_csv(\"../datasets/iris/iris.csv\")" |
| 41 | + ] |
| 42 | + }, |
| 43 | + { |
| 44 | + "cell_type": "code", |
| 45 | + "execution_count": 8, |
| 46 | + "metadata": {}, |
| 47 | + "outputs": [], |
| 48 | + "source": [ |
| 49 | + "X = df.iloc[:,0:4].values\n", |
| 50 | + "y = df.iloc[:,4].values\n", |
| 51 | + "X_std = StandardScaler().fit_transform(X)" |
| 52 | + ] |
| 53 | + }, |
| 54 | + { |
| 55 | + "cell_type": "code", |
| 56 | + "execution_count": 9, |
| 57 | + "metadata": {}, |
| 58 | + "outputs": [], |
| 59 | + "source": [ |
| 60 | + "from sklearn.decomposition import PCA as sk_pca" |
| 61 | + ] |
| 62 | + }, |
| 63 | + { |
| 64 | + "cell_type": "code", |
| 65 | + "execution_count": 11, |
| 66 | + "metadata": {}, |
| 67 | + "outputs": [], |
| 68 | + "source": [ |
| 69 | + "acp = sk_pca(n_components=2)\n", |
| 70 | + "Y = acp.fit_transform(X_std)" |
| 71 | + ] |
| 72 | + }, |
| 73 | + { |
| 74 | + "cell_type": "code", |
| 75 | + "execution_count": 12, |
| 76 | + "metadata": {}, |
| 77 | + "outputs": [ |
| 78 | + { |
| 79 | + "data": { |
| 80 | + "text/plain": [ |
| 81 | + "array([[-2.26470281, 0.4800266 ],\n", |
| 82 | + " [-2.08096115, -0.67413356],\n", |
| 83 | + " [-2.36422905, -0.34190802],\n", |
| 84 | + " [-2.29938422, -0.59739451],\n", |
| 85 | + " [-2.38984217, 0.64683538],\n", |
| 86 | + " [-2.07563095, 1.48917752],\n", |
| 87 | + " [-2.44402884, 0.0476442 ],\n", |
| 88 | + " [-2.23284716, 0.22314807],\n", |
| 89 | + " [-2.33464048, -1.11532768],\n", |
| 90 | + " [-2.18432817, -0.46901356],\n", |
| 91 | + " [-2.1663101 , 1.04369065],\n", |
| 92 | + " [-2.32613087, 0.13307834],\n", |
| 93 | + " [-2.2184509 , -0.72867617],\n", |
| 94 | + " [-2.6331007 , -0.96150673],\n", |
| 95 | + " [-2.1987406 , 1.86005711],\n", |
| 96 | + " [-2.26221453, 2.68628449],\n", |
| 97 | + " [-2.2075877 , 1.48360936],\n", |
| 98 | + " [-2.19034951, 0.48883832],\n", |
| 99 | + " [-1.898572 , 1.40501879],\n", |
| 100 | + " [-2.34336905, 1.12784938],\n", |
| 101 | + " [-1.914323 , 0.40885571],\n", |
| 102 | + " [-2.20701284, 0.92412143],\n", |
| 103 | + " [-2.7743447 , 0.45834367],\n", |
| 104 | + " [-1.81866953, 0.08555853],\n", |
| 105 | + " [-2.22716331, 0.13725446],\n", |
| 106 | + " [-1.95184633, -0.62561859],\n", |
| 107 | + " [-2.05115137, 0.24216355],\n", |
| 108 | + " [-2.16857717, 0.52714953],\n", |
| 109 | + " [-2.13956345, 0.31321781],\n", |
| 110 | + " [-2.26526149, -0.3377319 ],\n", |
| 111 | + " [-2.14012214, -0.50454069],\n", |
| 112 | + " [-1.83159477, 0.42369507],\n", |
| 113 | + " [-2.61494794, 1.79357586],\n", |
| 114 | + " [-2.44617739, 2.15072788],\n", |
| 115 | + " [-2.10997488, -0.46020184],\n", |
| 116 | + " [-2.2078089 , -0.2061074 ],\n", |
| 117 | + " [-2.04514621, 0.66155811],\n", |
| 118 | + " [-2.52733191, 0.59229277],\n", |
| 119 | + " [-2.42963258, -0.90418004],\n", |
| 120 | + " [-2.16971071, 0.26887896],\n", |
| 121 | + " [-2.28647514, 0.44171539],\n", |
| 122 | + " [-1.85812246, -2.33741516],\n", |
| 123 | + " [-2.5536384 , -0.47910069],\n", |
| 124 | + " [-1.96444768, 0.47232667],\n", |
| 125 | + " [-2.13705901, 1.14222926],\n", |
| 126 | + " [-2.0697443 , -0.71105273],\n", |
| 127 | + " [-2.38473317, 1.1204297 ],\n", |
| 128 | + " [-2.39437631, -0.38624687],\n", |
| 129 | + " [-2.22944655, 0.99795976],\n", |
| 130 | + " [-2.20383344, 0.00921636],\n", |
| 131 | + " [ 1.10178118, 0.86297242],\n", |
| 132 | + " [ 0.73133743, 0.59461473],\n", |
| 133 | + " [ 1.24097932, 0.61629765],\n", |
| 134 | + " [ 0.40748306, -1.75440399],\n", |
| 135 | + " [ 1.0754747 , -0.20842105],\n", |
| 136 | + " [ 0.38868734, -0.59328364],\n", |
| 137 | + " [ 0.74652974, 0.77301931],\n", |
| 138 | + " [-0.48732274, -1.85242909],\n", |
| 139 | + " [ 0.92790164, 0.03222608],\n", |
| 140 | + " [ 0.01142619, -1.03401828],\n", |
| 141 | + " [-0.11019628, -2.65407282],\n", |
| 142 | + " [ 0.44069345, -0.06329519],\n", |
| 143 | + " [ 0.56210831, -1.76472438],\n", |
| 144 | + " [ 0.71956189, -0.18622461],\n", |
| 145 | + " [-0.0333547 , -0.43900321],\n", |
| 146 | + " [ 0.87540719, 0.50906396],\n", |
| 147 | + " [ 0.35025167, -0.19631173],\n", |
| 148 | + " [ 0.15881005, -0.79209574],\n", |
| 149 | + " [ 1.22509363, -1.6222438 ],\n", |
| 150 | + " [ 0.1649179 , -1.30260923],\n", |
| 151 | + " [ 0.73768265, 0.39657156],\n", |
| 152 | + " [ 0.47628719, -0.41732028],\n", |
| 153 | + " [ 1.2341781 , -0.93332573],\n", |
| 154 | + " [ 0.6328582 , -0.41638772],\n", |
| 155 | + " [ 0.70266118, -0.06341182],\n", |
| 156 | + " [ 0.87427365, 0.25079339],\n", |
| 157 | + " [ 1.25650912, -0.07725602],\n", |
| 158 | + " [ 1.35840512, 0.33131168],\n", |
| 159 | + " [ 0.66480037, -0.22592785],\n", |
| 160 | + " [-0.04025861, -1.05871855],\n", |
| 161 | + " [ 0.13079518, -1.56227183],\n", |
| 162 | + " [ 0.02345269, -1.57247559],\n", |
| 163 | + " [ 0.24153827, -0.77725638],\n", |
| 164 | + " [ 1.06109461, -0.63384324],\n", |
| 165 | + " [ 0.22397877, -0.28777351],\n", |
| 166 | + " [ 0.42913912, 0.84558224],\n", |
| 167 | + " [ 1.04872805, 0.5220518 ],\n", |
| 168 | + " [ 1.04453138, -1.38298872],\n", |
| 169 | + " [ 0.06958832, -0.21950333],\n", |
| 170 | + " [ 0.28347724, -1.32932464],\n", |
| 171 | + " [ 0.27907778, -1.12002852],\n", |
| 172 | + " [ 0.62456979, 0.02492303],\n", |
| 173 | + " [ 0.33653037, -0.98840402],\n", |
| 174 | + " [-0.36218338, -2.01923787],\n", |
| 175 | + " [ 0.28858624, -0.85573032],\n", |
| 176 | + " [ 0.09136066, -0.18119213],\n", |
| 177 | + " [ 0.22771687, -0.38492008],\n", |
| 178 | + " [ 0.57638829, -0.1548736 ],\n", |
| 179 | + " [-0.44766702, -1.54379203],\n", |
| 180 | + " [ 0.25673059, -0.5988518 ],\n", |
| 181 | + " [ 1.84456887, 0.87042131],\n", |
| 182 | + " [ 1.15788161, -0.69886986],\n", |
| 183 | + " [ 2.20526679, 0.56201048],\n", |
| 184 | + " [ 1.44015066, -0.04698759],\n", |
| 185 | + " [ 1.86781222, 0.29504482],\n", |
| 186 | + " [ 2.75187334, 0.8004092 ],\n", |
| 187 | + " [ 0.36701769, -1.56150289],\n", |
| 188 | + " [ 2.30243944, 0.42006558],\n", |
| 189 | + " [ 2.00668647, -0.71143865],\n", |
| 190 | + " [ 2.25977735, 1.92101038],\n", |
| 191 | + " [ 1.36417549, 0.69275645],\n", |
| 192 | + " [ 1.60267867, -0.42170045],\n", |
| 193 | + " [ 1.8839007 , 0.41924965],\n", |
| 194 | + " [ 1.2601151 , -1.16226042],\n", |
| 195 | + " [ 1.4676452 , -0.44227159],\n", |
| 196 | + " [ 1.59007732, 0.67624481],\n", |
| 197 | + " [ 1.47143146, 0.25562182],\n", |
| 198 | + " [ 2.42632899, 2.55666125],\n", |
| 199 | + " [ 3.31069558, 0.01778095],\n", |
| 200 | + " [ 1.26376667, -1.70674538],\n", |
| 201 | + " [ 2.0377163 , 0.91046741],\n", |
| 202 | + " [ 0.97798073, -0.57176432],\n", |
| 203 | + " [ 2.89765149, 0.41364106],\n", |
| 204 | + " [ 1.33323218, -0.48181122],\n", |
| 205 | + " [ 1.7007339 , 1.01392187],\n", |
| 206 | + " [ 1.95432671, 1.0077776 ],\n", |
| 207 | + " [ 1.17510363, -0.31639447],\n", |
| 208 | + " [ 1.02095055, 0.06434603],\n", |
| 209 | + " [ 1.78834992, -0.18736121],\n", |
| 210 | + " [ 1.86364755, 0.56229073],\n", |
| 211 | + " [ 2.43595373, 0.25928443],\n", |
| 212 | + " [ 2.30492772, 2.62632347],\n", |
| 213 | + " [ 1.86270322, -0.17854949],\n", |
| 214 | + " [ 1.11414774, -0.29292262],\n", |
| 215 | + " [ 1.2024733 , -0.81131527],\n", |
| 216 | + " [ 2.79877045, 0.85680333],\n", |
| 217 | + " [ 1.57625591, 1.06858111],\n", |
| 218 | + " [ 1.3462921 , 0.42243061],\n", |
| 219 | + " [ 0.92482492, 0.0172231 ],\n", |
| 220 | + " [ 1.85204505, 0.67612817],\n", |
| 221 | + " [ 2.01481043, 0.61388564],\n", |
| 222 | + " [ 1.90178409, 0.68957549],\n", |
| 223 | + " [ 1.15788161, -0.69886986],\n", |
| 224 | + " [ 2.04055823, 0.8675206 ],\n", |
| 225 | + " [ 1.9981471 , 1.04916875],\n", |
| 226 | + " [ 1.87050329, 0.38696608],\n", |
| 227 | + " [ 1.56458048, -0.89668681],\n", |
| 228 | + " [ 1.5211705 , 0.26906914],\n", |
| 229 | + " [ 1.37278779, 1.01125442],\n", |
| 230 | + " [ 0.96065603, -0.02433167]])" |
| 231 | + ] |
| 232 | + }, |
| 233 | + "execution_count": 12, |
| 234 | + "metadata": {}, |
| 235 | + "output_type": "execute_result" |
| 236 | + } |
| 237 | + ], |
| 238 | + "source": [ |
| 239 | + "Y" |
| 240 | + ] |
| 241 | + }, |
| 242 | + { |
| 243 | + "cell_type": "code", |
| 244 | + "execution_count": 15, |
| 245 | + "metadata": {}, |
| 246 | + "outputs": [ |
| 247 | + { |
| 248 | + "data": { |
| 249 | + "text/html": [ |
| 250 | + "<iframe id=\"igraph\" scrolling=\"no\" style=\"border:none;\" seamless=\"seamless\" src=\"https://plot.ly/~JuanGabriel/48.embed\" height=\"525px\" width=\"100%\"></iframe>" |
| 251 | + ], |
| 252 | + "text/plain": [ |
| 253 | + "<plotly.tools.PlotlyDisplay object>" |
| 254 | + ] |
| 255 | + }, |
| 256 | + "execution_count": 15, |
| 257 | + "metadata": {}, |
| 258 | + "output_type": "execute_result" |
| 259 | + } |
| 260 | + ], |
| 261 | + "source": [ |
| 262 | + "results = []\n", |
| 263 | + "\n", |
| 264 | + "for name in ('setosa', 'versicolor', 'virginica'):\n", |
| 265 | + " result = Scatter(x = Y[y==name,0], y = Y[y==name, 1],\n", |
| 266 | + " mode = \"markers\", name = name,\n", |
| 267 | + " marker = Marker(size=8, line=Line(color=\"rgba(225,225,225,0.2)\", width=0.5),\n", |
| 268 | + " opacity = 0.75))\n", |
| 269 | + " results.append(result)\n", |
| 270 | + " \n", |
| 271 | + "data = Data(results)\n", |
| 272 | + "layout = Layout(xaxis = XAxis(title=\"CP1\", showline=False),\n", |
| 273 | + " yaxis = YAxis(title=\"CP2\", showline=False))\n", |
| 274 | + "\n", |
| 275 | + "fig = Figure(data = data, layout = layout)\n", |
| 276 | + "py.iplot(fig)" |
| 277 | + ] |
| 278 | + }, |
| 279 | + { |
| 280 | + "cell_type": "code", |
| 281 | + "execution_count": null, |
| 282 | + "metadata": {}, |
| 283 | + "outputs": [], |
| 284 | + "source": [] |
| 285 | + } |
| 286 | + ], |
| 287 | + "metadata": { |
| 288 | + "kernelspec": { |
| 289 | + "display_name": "Python 3", |
| 290 | + "language": "python", |
| 291 | + "name": "python3" |
| 292 | + }, |
| 293 | + "language_info": { |
| 294 | + "codemirror_mode": { |
| 295 | + "name": "ipython", |
| 296 | + "version": 3 |
| 297 | + }, |
| 298 | + "file_extension": ".py", |
| 299 | + "mimetype": "text/x-python", |
| 300 | + "name": "python", |
| 301 | + "nbconvert_exporter": "python", |
| 302 | + "pygments_lexer": "ipython3", |
| 303 | + "version": "3.8.5" |
| 304 | + } |
| 305 | + }, |
| 306 | + "nbformat": 4, |
| 307 | + "nbformat_minor": 2 |
| 308 | +} |
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