From befe7973c492ced20e2d2e5869da3d199b646981 Mon Sep 17 00:00:00 2001 From: Neil Shephard Date: Mon, 16 Oct 2023 15:45:25 +0100 Subject: [PATCH] Missed some double-quotes --- src/skan/pipe.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/skan/pipe.py b/src/skan/pipe.py index d8244d80..b9707439 100644 --- a/src/skan/pipe.py +++ b/src/skan/pipe.py @@ -87,7 +87,7 @@ def process_images( brightness_offset, scale_metadata_path, crop_radius=0, - smooth_method="Gaussian", + smooth_method='Gaussian', num_threads=CPU_COUNT, ): """Full pipeline from images to skeleton stats with local median threshold. @@ -150,7 +150,7 @@ def process_images( ) image_stats['filename'] = filename image_stats['branch density'] = ( - framedata.shape[0] / image_stats["area"] + framedata.shape[0] / image_stats['area'] ) j2j = framedata[framedata['branch_type'] == 2] image_stats['mean J2J branch distance'] = (