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Commits on May 22, 2012

• version bump, update documentation

  

  James Casbon

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• Merge pull request #40 from libor-m/vcf-filter-ad-hoc

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• include tabix index for tests

  

  James Casbon

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• distribute compatible testing

  

  James Casbon

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• convert tests so they are runnable with 2to3, need to include test data in build

  

  James Casbon

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• convert tests so they are runnable with 2to3, need to include test data in build

  

  James Casbon

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• no pysam for travis on python 3

  

  James Casbon

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• travis on 2.5/3.2

  

  James Casbon

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• Merge pull request #41 from marcelm/master

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  James Casbon

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• Merge remote-tracking branch 'arq5x/master'

  

  James Casbon

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Commits on May 18, 2012

• use_2to3 in setup.py, mostly completing Python 3 support.

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  marcelm

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Commits on May 17, 2012

• change Reader constructor to deal with encoding issues

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• use iterators where possible; make 2to3 happier

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• help 2to3 by splitting up a line containing next()

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• use open() instead of file(). use rt/rb mode strings

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• fix 2to3 warning "You should use a for loop here"

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Commits on Apr 24, 2012

• remove trailing CR on sample line

  

  James Casbon

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Commits on Apr 23, 2012

• split samples on tab not space

  

  James Casbon

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Commits on Apr 13, 2012

• var_filter improvments

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Commits on Apr 6, 2012

• vcf_filter.py command syntax redux

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Commits on Apr 5, 2012

• avoid recomputing genotype stats for VCFs with _many_ samples

  arq5x

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• vcf_filter improvments

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• fixups for vcf_filter

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• Merge branch 'master' of github.com:jamescasbon/PyVCF

  

  James Casbon

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• new func. to support SVs in VCF 4.1

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• optimize _Call.gt_type

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Commits on Apr 4, 2012

• add ability to load ad-hoc filters to vcf_filter.py

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• Merge pull request #37 from arq5x/master

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  James Casbon

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• corrected GT defn. in test/example-4.1-sv.vcf

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Commits on Apr 3, 2012

• version bump

  

  James Casbon

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• Single floats in Reader._sample_parser not being converted to float #35

  

  James Casbon

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Commits on Mar 30, 2012

• Merge pull request #34 from arq5x/master

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  James Casbon

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Commits on Mar 29, 2012

• var.INFO now returns full strings for type=String and num=1

  arq5x

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Commits on Mar 22, 2012

• make executable

  

  James Casbon

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• update history

  

  James Casbon

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