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Commits on May 24, 2016

• Merge branch 'develop'

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• Bump development version number to 1.9.1

  ilarischeinin

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• Make applyFilters() able to handle missing bin annotations, close #31

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Commits on May 17, 2016

• Merge pull request #32 from HenrikBengtsson/develop

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• Travis CI: Argh; another typo

  HenrikBengtsson

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• Remove stray erroneous bytes (injected in previous commit)

  HenrikBengtsson

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• Fix Travis CI

  HenrikBengtsson

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• future 0.14.0 now on CRAN

  HenrikBengtsson

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Commits on May 16, 2016

• Bump package dependencies

  HenrikBengtsson

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• Explicit importing of stats::formula. Removes R CMD check NOTE.

  HenrikBengtsson

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Commits on Mar 22, 2016

• Merge branch 'develop'

  ilarischeinin

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• Bump version number to 1.7.5, update NEWS and manual pages, close #27

  ilarischeinin

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• Increase verbosity for calculateMappability()

  ilarischeinin

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• Revert stripping of "chr" from chromosome names

  ilarischeinin

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Commits on Mar 20, 2016

• Update createBinAnnotations.R

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  JocelynSP

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Commits on Mar 2, 2016

• Fixed build error by importing missing function from DNAcopy

  daoud-sie

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Commits on Feb 26, 2016

• - Added feature to select segment summary statistic

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Commits on Feb 24, 2016

• Merge branch 'develop'

  ilarischeinin

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• Update vignette

  ilarischeinin

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• Add option to correct only for GC content or mappability

  ilarischeinin

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Commits on Feb 20, 2016

• Bump development version number to 1.7.4

  ilarischeinin

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• Update README.md

  ilarischeinin

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• Merge branch 'develop'

  ilarischeinin

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• Fix createBins() when seqlevelsStyle() is ambiguous

  ilarischeinin

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• Fix slim in plots when end of last chromosome is filtered out

  ilarischeinin

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• Consolidate NEWS for upcoming Bioconductor 3.3 release

  ilarischeinin

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• Implement parallel computing for createBins()

  ilarischeinin

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• Fix chromosome order in calculateMappability()

  ilarischeinin

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Commits on Feb 19, 2016

• Merge pull request #25 from ccagc/develop

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  ilarischeinin

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Commits on Feb 17, 2016

• Fix noisePlot() for paired end data

  ilarischeinin

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• Bump R version number dependency (to what IRanges already requires)

  ilarischeinin

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Commits on Feb 15, 2016

• Add option to specify random seeds

  ilarischeinin

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Commits on Feb 8, 2016

• Bump development version number to 1.7.3

  ilarischeinin

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Commits on Feb 6, 2016

• Make package future optional

  ilarischeinin

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• Update vignette to use BiocStyle

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