example_blast_search_strategy.asn

Blast4-request ::= {
  body queue-search {
    program "blastp",
    service "plain",
    queries bioseq-set {
      seq-set {
        seq {
          id {
            local str "Query_54566"
          },
          descr {
            user {
              type str "CFastaReader",
              data {
                {
                  label str "DefLine",
                  data str ">sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo
 sapiens OX=9606 GN=PKM PE=1 SV=4"
                }
              }
            },
            title "sp|P14618|KPYM_HUMAN Pyruvate kinase PKM OS=Homo sapiens
 OX=9606 GN=PKM PE=1 SV=4"
          },
          inst {
            repr raw,
            mol aa,
            length 531,
            seq-data ncbieaa "MSKPHSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGII
CTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKG
SGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLG
SKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDE
ILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIM
LSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSA
HQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWR
PGSGFTNTMRVVPVP"
          }
        }
      }
    },
    subject database "nr_v5",
    algorithm-options {
      {
        name "WordSize",
        value integer 6
      },
      {
        name "WordThreshold",
        value integer 21
      },
      {
        name "EvalueThreshold",
        value cutoff e-value { 1, 10, 1 }
      },
      {
        name "UngappedMode",
        value boolean FALSE
      },
      {
        name "PercentIdentity",
        value real { 0, 10, 0 }
      },
      {
        name "HitlistSize",
        value integer 5000
      },
      {
        name "EffectiveSearchSpace",
        value big-integer 0
      },
      {
        name "DbLength",
        value big-integer 0
      },
      {
        name "WindowSize",
        value integer 40
      },
      {
        name "SegFiltering",
        value boolean FALSE
      },
      {
        name "MaskAtHash",
        value boolean FALSE
      },
      {
        name "MatrixName",
        value string "BLOSUM62"
      },
      {
        name "GapOpeningCost",
        value integer 11
      },
      {
        name "GapExtensionCost",
        value integer 1
      },
      {
        name "CompositionBasedStats",
        value integer 2
      },
      {
        name "SmithWatermanMode",
        value boolean FALSE
      }
    },
    format-options {
      {
        name "Web_JobTitle",
        value string "KPYM_HUMAN"
      },
      {
        name "Web_SeqUncult",
        value boolean TRUE
      },
      {
        name "Web_NewWindow",
        value boolean TRUE
      },
      {
        name "Web_ShortQueryAdjust",
        value boolean TRUE
      }
    }
  }
}