diff --git a/CHANGELOG.md b/CHANGELOG.md index fa173c7..df4dbf7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## [0.2.1] 2021-07-23 + +### Added + +Added RO-Crate metadata file. No functional changes. + ## [0.2] - 2021-04-30 ### Changed - Lower the default for consensus variant allele frequency threshold to 0.7 @@ -24,7 +30,6 @@ variants of its samples as stated in the README, independent of it residing in low-coverage regions or not. - ## [0.1] - Initial version of COVID-19: consensus construction diff --git a/consensus-from-variation.ga b/consensus-from-variation.ga index 453db88..81f2ff6 100644 --- a/consensus-from-variation.ga +++ b/consensus-from-variation.ga @@ -11,7 +11,7 @@ "format-version": "0.1", "license": "MIT", "name": "COVID-19: consensus construction", - "release": "0.2", + "release": "0.2.1", "steps": { "0": { "annotation": "Collection of VCFs produced by upstream workflows for variation analysis", diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json new file mode 100644 index 0000000..e4f31f7 --- /dev/null +++ b/ro-crate-metadata.json @@ -0,0 +1,151 @@ +{ + "@context": [ + "https://w3id.org/ro/crate/1.1/context", + { + "GithubService": "https://w3id.org/ro/terms/test#GithubService", + "JenkinsService": "https://w3id.org/ro/terms/test#JenkinsService", + "PlanemoEngine": "https://w3id.org/ro/terms/test#PlanemoEngine", + "TestDefinition": "https://w3id.org/ro/terms/test#TestDefinition", + "TestInstance": "https://w3id.org/ro/terms/test#TestInstance", + "TestService": "https://w3id.org/ro/terms/test#TestService", + "TestSuite": "https://w3id.org/ro/terms/test#TestSuite", + "TravisService": "https://w3id.org/ro/terms/test#TravisService", + "definition": "https://w3id.org/ro/terms/test#definition", + "engineVersion": "https://w3id.org/ro/terms/test#engineVersion", + "instance": "https://w3id.org/ro/terms/test#instance", + "resource": "https://w3id.org/ro/terms/test#resource", + "runsOn": "https://w3id.org/ro/terms/test#runsOn" + } + ], + "@graph": [ + { + "@id": "./", + "@type": "Dataset", + "datePublished": "2021-07-26T10:22:23.305126", + "hasPart": [ + { + "@id": "consensus-from-variation.ga" + }, + { + "@id": "README.md" + }, + { + "@id": "consensus-from-variation-test.yml" + } + ], + "isBasedOn": "https://github.com/iwc-workflows/sars-cov-2-consensus-from-variation", + "license": "MIT", + "mainEntity": { + "@id": "consensus-from-variation.ga" + }, + "mentions": [ + { + "@id": "#test1" + } + ] + }, + { + "@id": "ro-crate-metadata.json", + "@type": "CreativeWork", + "about": { + "@id": "./" + }, + "conformsTo": { + "@id": "https://w3id.org/ro/crate/1.1" + } + }, + { + "@id": "consensus-from-variation.ga", + "@type": [ + "File", + "SoftwareSourceCode", + "ComputationalWorkflow" + ], + "creator": [ + { + "@id": "https://orcid.org/0000-0002-9464-6640" + } + ], + "name": "COVID-19: consensus construction", + "programmingLanguage": { + "@id": "#galaxy" + }, + "url": "https://github.com/iwc-workflows/sars-cov-2-consensus-from-variation", + "version": "0.2.1" + }, + { + "@id": "#galaxy", + "@type": "ComputerLanguage", + "identifier": { + "@id": "https://galaxyproject.org/" + }, + "name": "Galaxy", + "url": { + "@id": "https://galaxyproject.org/" + }, + "version": "v19_09" + }, + { + "@id": "https://orcid.org/0000-0002-9464-6640", + "@type": "Person", + "name": "Wolfgang Maier" + }, + { + "@id": "README.md", + "@type": "File" + }, + { + "@id": "#test1", + "@type": "TestSuite", + "definition": { + "@id": "consensus-from-variation-test.yml" + }, + "instance": [ + { + "@id": "#test1_1" + } + ], + "mainEntity": { + "@id": "consensus-from-variation.ga" + }, + "name": "test1" + }, + { + "@id": "#test1_1", + "@type": "TestInstance", + "name": "test1_1", + "resource": "repos/galaxyproject/iwc/actions/workflows/workflow_test.yml", + "runsOn": { + "@id": "https://w3id.org/ro/terms/test#GithubService" + }, + "url": "https://api.github.com" + }, + { + "@id": "https://w3id.org/ro/terms/test#GithubService", + "@type": "TestService", + "name": "Github Actions", + "url": { + "@id": "https://github.com" + } + }, + { + "@id": "consensus-from-variation-test.yml", + "@type": [ + "File", + "TestDefinition" + ], + "conformsTo": { + "@id": "https://w3id.org/ro/terms/test#PlanemoEngine" + }, + "engineVersion": ">=0.74.6" + }, + { + "@id": "https://w3id.org/ro/terms/test#PlanemoEngine", + "@type": "SoftwareApplication", + "name": "Planemo", + "url": { + "@id": "https://github.com/galaxyproject/planemo" + } + } + ] +} \ No newline at end of file