.gitignore

/Mac-Finder-DSStore-0.94
/db.xml.gz
.DS_Store
.project
.metadata
/eclipse/
/intellij/
/netbeans/
/build.xml
.checksums
/build/
/make-targets
/fiji.o
/tmp.rc
/tmp.o
/fiji
/fiji.exe
/fiji-tiger
/fiji-panther
/fiji-macosx.dmg
/tests/plugins
/jvm.cfg
/samples/
*.swp
/.recent-changes.*
/IJ_Prefs.txt
/Fiji.app
/fiji-*.dmg
/fiji-*.zip
/fiji-*.tar.bz2
/fiji-*.7z
*~
*$py.class
/nightly-build/
/full-nightly-build/
/MMConfig_demo.cfg
/MMStartup.bsh
/mmgr_dal_*
/CoreLog.txt
/chroot-*-i386
/livecd
/root-x86_64-pc-linux
/jars/javac.jar
/jars/cachedir
/tmp.ijm
/jars/fake.jar
/jars/ij.jar
/jars/Fiji.jar
/plugins/Jython_Interpreter.jar
/plugins/Clojure_Interpreter.jar
/plugins/JRuby_Interpreter.jar
/plugins/BeanShell_Interpreter.jar
/plugins/Bug_Submitter.jar
/plugins/Javascript_.jar
/plugins/LSM_Reader.jar
/plugins/LSM_Toolbox.jar
/plugins/SplineDeformationGenerator_.jar
/plugins/bUnwarpJ_.jar
/plugins/register_virtual_stack_slices.jar
/plugins/registration_3d.jar
/plugins/IO_.jar
/plugins/CLI_.jar
/plugins/level_sets.jar
/plugins/VIB_.jar
/plugins/TrakEM2_.jar
/plugins/mpicbg_.jar
/plugins/Analyze_Reader_Writer.jar
/plugins/Color_Histogram.jar
/plugins/Color_Inspector_3D.jar
/plugins/Image_5D.jar
/plugins/Interactive_3D_Surface_Plot.jar
/plugins/M_I_P.jar
/plugins/TransformJ_.jar
/plugins/View5D_.jar
/plugins/Volume_Viewer.jar
/plugins/ij-ImageIO_.jar
/plugins/loci_tools.jar
*-stamp
/jars/clojure.jar
/plugins/IJ_Robot.jar
/plugins/Fiji_Updater.jar
/plugins/Daltonize_.jar
/plugins/Stitching_.jar
/plugins/AnalyzeSkeleton_.jar
/plugins/Skeletonize3D_.jar
/jars/jacl.jar
/jars/batik.jar
/jars/fiji-scripting.jar
/plugins/TurboReg_.jar
/plugins/Fiji_Plugins.jar
/plugins/ToAST_.jar
/jars/junit-4.5.jar
/plugins/MTrack2_.jar
/plugins/Time_Stamper.jar
/plugins/Series_Labeler.jar
/plugins/Statistical_Region_Merging.jar
/plugins/Refresh_Javas.jar
/plugins/Auto_Threshold.jar
/plugins/Arrow_.jar
/plugins/Stack_Manipulation.jar
/plugins/FlowJ_.jar
/plugins/PIV_analyser.jar
/plugins/Record_Screen.jar
/plugins/Video_Editing.jar
/jars/zs.jar
/plugins/Sync_Win.jar
/jars/rsyntaxtextarea.jar
/jars/autocomplete.jar
/plugins/Gray_Morphology.jar
/plugins/Colocalisation_Analysis.jar
/plugins/LocalThickness_.jar
/plugins/Fiji_Developer.jar
/jars/test-fiji.jar
/plugins/Manual_Tracking.jar
/plugins/Calculator_Plus.jar
/plugins/Script_Editor.jar
/plugins/3D_Objects_Counter.jar
/plugins/Trainable_Segmentation.jar
/jars/weka.jar
/plugins/IsoData_Classifier.jar
/plugins/RATS_.jar
/jars/jython.jar
/jars/VectorString.jar
/jars/fiji-lib.jar
/jars/imglib.jar
/jars/imglib-algorithms.jar
/jars/imglib-ij.jar
/jars/imglib-io.jar
/jars/jep.jar
/plugins/Siox_Segmentation.jar
/plugins/Directionality_.jar
/jars/Jama-1.0.2.jar
/jars/mpicbg.jar
/plugins/Image_Expression_Parser.jar
/plugins/Algorithm_Launcher.jar
/jars/VIB-lib.jar
/src-plugins/Fiji/icon.png
/src-plugins/Script_Editor/function.png
/src-plugins/Script_Editor/icon.png
/src-plugins/Script_Editor/var.png
/src-plugins/VIB-lib/math3d/Eigensystem2x2Float.java
/src-plugins/VIB-lib/math3d/Eigensystem3x3Float.java
/src-plugins/VIB-lib/math3d/FloatMatrixN.java
/src-plugins/VIB-lib/math3d/JacobiFloat.java
/src-plugins/VIB-lib/vib/FloatMatrix.java
/jars/pal-optimization.jar
/plugins/Anisotropic_Diffusion_2D.jar
/AutoComplete/ant-classes/
/AutoComplete/autocomplete.jar
/AutoComplete/dist/
/RSyntaxTextArea/ant-classes/
/RSyntaxTextArea/dist/
/RSyntaxTextArea/rsyntaxtextarea.jar
/batik/batik-1.8pre/
/batik/batik.jar
/batik/classes/
/bio-formats/artifacts/
/bio-formats/components/bio-formats/build/
/bio-formats/components/common/build/
/bio-formats/components/flow-cytometry/build/
/bio-formats/components/forks/jai/build/
/bio-formats/components/forks/mdbtools/build/
/bio-formats/components/forks/poi/build/
/bio-formats/components/loci-plugins/build/
/bio-formats/components/ome-xml/build/
/bio-formats/components/stubs/lwf-stubs/build/
/bio-formats/loci_tools.jar
/clojure/classes/
/commons-math/commons-math.jar
/commons-math/lib/
/commons-math/target/
/ij-plugins/ij-ImageIO_.jar
/junit/junit4.5/
/junit/junit-4.5.jar
/junit/target/
/jython/jython/build/
/jython/jython/dist/
/jython/jython.jar
/jython/jython/tests/data/initializer/SyspathAppendingInitializer.class
/tcljava/jacl.jar
/weka/weka/build/
/weka/weka/dist/
/weka/weka.jar
/plugins/Simple_Neurite_Tracer.jar
/plugins/3D_Viewer.jar
/plugins/SPIM_Registration.jar
/bin/apache-maven-*/
/plugins/QuickPALM_.jar
/misc/headless.jar
/jars/commons-math.jar
/plugins/CPU_Meter.jar
/plugins/TopoJ_.jar
/plugins/Graph_Cut.jar
/plugins/Differentials_.jar
/plugins/MosaicJ_.jar
/plugins/PointPicker_.jar
/plugins/SheppLogan_.jar
/plugins/StackReg_.jar
/plugins/UnwarpJ_.jar
/plugins/Snakuscule_.jar
/jars/imagescience.jar
/plugins/TransformJ_.jar
/plugins/FeatureJ_.jar
/plugins/RandomJ_.jar
/plugins/Linear_Kuwahara.jar
/plugins/Jython_Scripts.jar
/plugins/Thread_Killer.jar
/jars/imglib-scripting.jar
/jars/mij.jar
/plugins/Temporal_Color_Coder.jar
/plugins/Samples_.jar
/plugins/Lasso_and_Blow_Tool.jar
/jars/wavelets.jar
/jars/imageware.jar
/plugins/Extended_Depth_Field.jar
/precompiled/fiji-tiger-i686
/precompiled/fiji-tiger-ppc
/precompiled/fiji-leopard
/jars/weave_jy2java.jar
/plugins/panorama_.jar