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Merged
merged 114 commits into from
Mar 19, 2025
Merged

Release/2.0.0 #25

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a5acf1e
Implement `DBEntry.get_sample` in IMASPy
maarten-ic Jul 9, 2024
fd49e02
Add docstrings for GetSliceParameters / GetSampleParameters
maarten-ic Jul 9, 2024
45aaaaa
Merge remote-tracking branch 'origin/develop' into feature/IMAS-3885-…
maarten-ic Nov 11, 2024
73268bb
Update tests for DD 4.0.0
maarten-ic Nov 11, 2024
bc9ea19
Update NCDBEntryImpl for get_sample and raise NotImplementedError
maarten-ic Nov 11, 2024
674460b
Set `begin_timerange_action` as available since AL core 5.4
maarten-ic Nov 11, 2024
0a47f94
Make the NC2IDS reader class-based
maarten-ic Nov 14, 2024
d59fcab
Add missing docstring
maarten-ic Nov 14, 2024
4d028e2
Merge remote-tracking branch 'origin/develop' into feature/IMAS-3885-…
maarten-ic Nov 15, 2024
ee385b7
Disable MDSplus backend tests for get_sample
maarten-ic Nov 15, 2024
d518a87
Pull request #239: Make the NC2IDS reader class-based
maarten-ic Nov 15, 2024
b007316
Add validation for the ids_properties.homogeneous time variable in ne…
maarten-ic Nov 13, 2024
f7be384
Additional validation checks and tests
maarten-ic Nov 15, 2024
e524646
Fix a bug with lazy loading multiple IDSs from the same HDF5 DBEntry
maarten-ic Nov 19, 2024
d47566b
Validate netCDF sparsity metadata
maarten-ic Nov 19, 2024
54d78d6
Add environment variable to disable netCDF file validation.
maarten-ic Nov 19, 2024
5ccae5d
Eliminate nc2ids function
maarten-ic Nov 19, 2024
afb8c29
Update `get_sample` docstring to clarify that the interpolation mode …
maarten-ic Nov 20, 2024
983a652
Pull request #241: Fix a bug with lazy loading multiple IDSs from the…
maarten-ic Nov 22, 2024
6cd1e44
Add `validate_nc` command to imaspy CLI
maarten-ic Nov 22, 2024
6ec21c7
Fix incorrect exception when using mode="x" for netCDF files
maarten-ic Nov 25, 2024
1f6c6fe
Close netCDF datasets when an exception is raised
maarten-ic Nov 25, 2024
b7d8963
Add unit tests for `nc_validate.py`
maarten-ic Nov 25, 2024
fc2cbf2
Additional documentation for the `imaspy validate_nc` command line tool
maarten-ic Nov 27, 2024
3c35fa9
Pull request #220: Implement `DBEntry.get_sample` in IMASPy
maarten-ic Dec 3, 2024
7c56b5f
Explicitly set `IDSDEF_PATH` when opening a DBEntry with the UDA backend
maarten-ic Dec 4, 2024
74d2e3a
Make prepare_data_dictionaries compatible with DD>4.0.0 (change in sc…
olivhoenen Dec 9, 2024
77fb044
Updating the license and readme
olivhoenen Dec 11, 2024
d80778f
Replace references to LICENSE.md to LICENSE.txt
maarten-ic Dec 12, 2024
bd098bb
Pull request #244: Add `validate_nc` command to imaspy CLI
maarten-ic Dec 12, 2024
d427972
Pull request #248: Replace references to LICENSE.md to LICENSE.txt
maarten-ic Dec 12, 2024
1968cde
Pull request #246: Make prepare_data_dictionaries compatible with DD>…
olivhoenen Dec 12, 2024
cef4667
Fix a bug with lazy loading
maarten-ic Dec 17, 2024
4beab9f
Add contributing guidelines
olivhoenen Jan 10, 2025
2eb385e
fixed readme.md for imas
gautamraj8044 Dec 13, 2024
133f78c
Apply suggestion on naming
olivhoenen Dec 17, 2024
6f871f5
Update README.md
gautamraj8044 Dec 17, 2024
693f035
Update CONTRIBUTING.md
maarten-ic Jan 20, 2025
b2913f6
renamed imaspy to imas
prasad-sawantdesai Jan 22, 2025
6e9d47f
added github actions and readthedocs conf
prasad-sawantdesai Jan 22, 2025
36a7d8b
configures setuptools_scm
prasad-sawantdesai Jan 22, 2025
42c3f91
removed dd_helpers_old
prasad-sawantdesai Jan 22, 2025
5b3d0fe
Modifications for compatibility with TORAX.
Nush395 Jan 20, 2025
c1f7a96
Modify tests to use fixture.
Nush395 Jan 20, 2025
abcaf3f
Update imaspy/test/test_ids_mixin.py
Nush395 Jan 21, 2025
aab7f66
Update imaspy/test/test_cli.py
Nush395 Jan 21, 2025
006580a
Add error message when attemtping to store complex number with netcdf…
Nush395 Jan 21, 2025
b2afe07
Formatting.
Nush395 Jan 21, 2025
816bbd4
Add tests for different versions of netcdf.
Nush395 Jan 21, 2025
2f7b591
Minor changes to tests.
Nush395 Jan 21, 2025
3591f17
Rename test.
Nush395 Jan 21, 2025
0d48b0b
Update numpy exception version change to 1.25.
Nush395 Jan 21, 2025
68c225d
Fix bug in skip logic of tests.
Nush395 Jan 21, 2025
4570e13
merged develop branch
prasad-sawantdesai Jan 22, 2025
00e1b38
fixed ci scripts and formatting
prasad-sawantdesai Jan 22, 2025
95d587b
Adding release notes for tag 1.2.0
olivhoenen Jan 22, 2025
835dccf
renaming of imas-python to IMAS-Python
prasad-sawantdesai Jan 23, 2025
f8ed355
fixed pytest and updated documentation references
prasad-sawantdesai Jan 23, 2025
07c2144
merged with develop
prasad-sawantdesai Jan 23, 2025
9d925a5
fixed readthedocs link
prasad-sawantdesai Jan 23, 2025
f53fb88
Apply suggestions from code review
prasad-sawantdesai Jan 23, 2025
438dc73
Few fixes in the documentation
olivhoenen Jan 24, 2025
c5b43c4
Merge pull request #14 from iterorganization/rename_imaspy_sources_to…
olivhoenen Jan 24, 2025
954bdb8
Publish package to pypi for tags only, and to testpypi for develop only
olivhoenen Jan 24, 2025
6186d46
fixed issue with imas-core dependency while installing pip install -e…
prasad-sawantdesai Feb 3, 2025
1d5b967
fixed create_model_ids_xml function
prasad-sawantdesai Feb 3, 2025
39c8db7
pass filename as string
prasad-sawantdesai Feb 3, 2025
cb3830a
Update imas/backends/imas_core/mdsplus_model.py
prasad-sawantdesai Feb 4, 2025
9a57d5c
Update imas/backends/imas_core/mdsplus_model.py
prasad-sawantdesai Feb 4, 2025
bc010ab
fixed review comments
prasad-sawantdesai Feb 4, 2025
1b4189d
Implement implicit DD version conversion in NetCDF backend
maarten-ic Feb 4, 2025
0c835a1
Improve performance of nc2ids by bypassing IDSPrimitive.value.setter …
maarten-ic Feb 4, 2025
7ab02c7
WIP: lazy loading for netCDF backend
maarten-ic Feb 4, 2025
e388694
keep ubuntu-22.04 because latest has Python 3.13 and saxonche is not …
prasad-sawantdesai Feb 5, 2025
eabbecf
Add tests for netcdf lazy loading and fix implementation bugs
maarten-ic Feb 5, 2025
962bc71
fixed Python version
prasad-sawantdesai Feb 5, 2025
a8a86d4
Merge pull request #16 from prasad-sawantdesai/fixes_imas_core_and_sa…
olivhoenen Feb 5, 2025
cfd9a56
Fix bug where untensorized data could be extracted as a 0D numpy arra…
maarten-ic Feb 5, 2025
1f5362e
Fix the thrown exception message when trying to load imas_core
olivhoenen Feb 6, 2025
a110d69
Add missing `lazy` argument to unit tests
maarten-ic Feb 7, 2025
ae9af2a
Merge branch 'develop' of https://github.com/iterorganization/imas-py…
maarten-ic Feb 7, 2025
62506e0
Update netcdf documentation
maarten-ic Feb 7, 2025
ee230cc
Merge pull request #17 from maarten-ic/feature/lazy-load-from-netcdf
maarten-ic Feb 10, 2025
02bcf9a
initial version
prasad-sawantdesai Feb 10, 2025
3587bc7
added matrix to run within different Python environment
prasad-sawantdesai Feb 10, 2025
430391d
fixed UTC issue in Python 3.8
prasad-sawantdesai Feb 11, 2025
6d95d00
timestamp converted to supported format for Python 3.8
prasad-sawantdesai Feb 11, 2025
36cebdf
Refactor iterators used in ids2nc and nc2ids
maarten-ic Mar 6, 2025
2429595
Refactor ids2nc, extract common tensorization logic in IDSTensorizer
maarten-ic Mar 7, 2025
09fb355
Implement `imas.util.to_xarray`
maarten-ic Mar 7, 2025
78b89f6
Add `xarray` as optional imas-python dependency
maarten-ic Mar 7, 2025
a56a5e7
Update xarray advanced course to mention imas.util.to_xarray
maarten-ic Mar 10, 2025
ce313de
Additional documentation for `imas.util.to_xarray`
maarten-ic Mar 10, 2025
dffeac7
Additional documentation and example for to_xarray
maarten-ic Mar 13, 2025
31b5385
Merge branch 'main' into release/2.0.0
olivhoenen Mar 17, 2025
49d87d4
Fixup merge conflicts
olivhoenen Mar 17, 2025
90e97b6
Fixup code after merge
olivhoenen Mar 17, 2025
2d93ab0
Updating changelog for release 2.0.0
olivhoenen Mar 17, 2025
f37b699
Fixup formatting in changelog
olivhoenen Mar 17, 2025
6151b37
removed pull_request event
prasad-sawantdesai Mar 17, 2025
062266a
added pull_request event with options
prasad-sawantdesai Mar 17, 2025
02c6387
Merge branch 'develop' into release/2.0.0
olivhoenen Mar 18, 2025
2e3b1b1
added workflow for sphinx doc generation and fixed docstrings
prasad-sawantdesai Mar 18, 2025
1d212a0
fix sphinx docstring issue
prasad-sawantdesai Mar 18, 2025
8f49f94
fixed formatting
prasad-sawantdesai Mar 18, 2025
1d0398e
fixed sphinx doc issue
prasad-sawantdesai Mar 18, 2025
125ba37
removed deactivate command from workflow
prasad-sawantdesai Mar 18, 2025
50eba56
Update imas/backends/netcdf/ids_tensorizer.py
prasad-sawantdesai Mar 18, 2025
aa18dcb
Update imas/backends/netcdf/nc2ids.py
prasad-sawantdesai Mar 18, 2025
84cb879
imas to imaspy for old version
prasad-sawantdesai Mar 18, 2025
cb64e55
Merge branch 'develop' into release/2.0.0
olivhoenen Mar 18, 2025
d81408c
Update the 5 min intro
olivhoenen Mar 18, 2025
8f7986d
Update documentation for release 2.0
olivhoenen Mar 19, 2025
0ecccbf
Update docs/source/changelog.rst
olivhoenen Mar 19, 2025
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Merge remote-tracking branch 'origin/develop' into feature/IMAS-3885-… 
…IMASPy-get_sample
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@maarten-ic
maarten-ic committed Nov 15, 2024
commit 4d028e275912ac61f57633a0e046cc2c37381b51

This merge commit was added into this branch cleanly.

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