Releases: iprada/Circle-Map
Circle-Map v1.1.4
New release featuring:
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Fixed a bug introduced in version 1.1.3 that made the graph prunning step fail in some cases. If you are using version 1.1.3, please update to version 1.1.4. Version 1.1.4 is more slow, but accurate. At the moment I am writting this I have a much faster prototype of Circle-Map that I hope to release soon.
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Error messages are more informative
Circle-Map v1.1.3
New release that fixes some bugs in the code and changes the default parameter settings:
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Bug fixed on the graph construction step: This release fixes a bug that was making Circle-Map very slow for DNA circles that were sequenced at very high depth. The error on the code caused that graph paths with very low probability were keep in some cases, making the code very slow. In an extreme case, the runtime was gone from >72h to 1h, while still producing almost identical results.
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The "minimum soft-clipped length" to attemp realignment has been set to 8. Before it was set to 4, and this causes a small decrease in precison, which could cause problems in very big datasets. Hence, the default is changed to 8 now.
Circle-Map v1.1.1
New Circle-Map release featuring:
- Better cluster distribution to worker cores: now, the work is more evenly distributed to the cores, making the cluster level parallelization more efficient
- Optimization using Just-In-Time compilation: more Circle-Map functions have been compiled with numba.
Taken together, this changes come with a speed-up of around 50% to Circle-Map runtime.