Pre-release activities (prepare for CRAN release) (#176)

# Pull Request

<!--- Replace `#nnn` with your issue link for reference. -->

Fixes #172 

### Summary

* Review and update:
    * [x] README.md (check example code)
    * [x] NEWS.md
      * one liner change
* Review functions:
    * [x] @example tag, make sure it runs, fix if otherwise
* [x] Make sure functions has @return tag to document the return value
    * [x] no \dontrun tag, replace with if(interactive()) if needed
      * `merge_datasets` example is insufficient
* [x] Package `Title` is not duplicated in Package `Description` in
DESCRIPTION file (e.g. this happens in teal.slice currently)
* [x] You have checked the Package Release Template
https://github.com/insightsengineering/teal.reporter/pull/205/files
* [x] Make sure there are no `:::` in examples
* if you need to retain the example that uses `:::`, use
`getFromNamespace()` function.
* [x] remove package:: call and depend package:: call from example.
@kartikeyakirar
* [x] Make sure all `teal.*` mentions are lower-cased and quoted
* [x] Make sure each link to our documentation hosted with pkgdown on
github pages do not have `/main/` in the address
  * it should have has `/latest-tag/` instead
* so we always expose the documentation of the latest release and not
what's currently on main branch but not yet released
* [x] Remove old rd syntax
* [x] Switch from title case into sentence case for title and
description of functions.
* [x] All package names in `Title` and `Description` fields of
DESCRIPTION file are quoted with `'` _(not backtick)_
* [x] Sanity check of all vignettes, make sure there is no typo, no
wrong format, etc. @kartikeyakirar

#### New

* [x] Remove prefixes from data calls `rADRS`, `rADTTE`, etc... (just
like `{teal.data}`)
* [x] Remove `return` wrapper if it is the last expression (per NEST
guidelines)
  * #177
* [x] Remove  exception in `.lintr`: `indentation_linter = NULL` 
* [x] ~Test for unused functions (in package and overall in NEST)~
@averissimo
    * PR request against this feature branch 
* 🛑 This should not be done on this release as it may have unintended
consequences.
* [See this
comment](#176 (comment))
with possible candidates
 * [x] Standard order of roxygen2 tags 
   * `@title ➡️ @doctype ➡️ @description ➡️ @details ➡️ @Rdname ➡️ `
* `➡️ @inheritParams ➡️ @params ➡️ @return ➡️ @Seealso ➡️ @references
➡️`
   * `➡️ @examples ➡️ @export ➡️ @Keywords  ➡️  @noRd`
* [x] Remove `@noMd` (in favor of `Roxygen: list(markdown = TRUE)` in
`DESCRIPTION`)

#### To consider?
* [x] Convert "# nolint" to specific rule exception
  * #178
* [x] ~Added `resolve()` to the list of exported functions as the
sub-functions are exported (`resolve.delayed_variable_choices`, ...).~
  * Let's discuss if this needs to be reverted.
* Edit: this is a trick to have S3methods internally as `resolve` should
not be exported see aff0f35

#### Move to its own issue

* [x] Make sure non-exported functions do not have examples
  * #181

#### After checklist is completed _(🚨 blocked until checklist is
completed)_
* [x] Run urlchecker::url_check() to identify broken links and fix
* [x] Run R CMD check --as-cran make sure everything pass
* [x] Make Sure `inst/WORDLIST` is minimalized

#### Content review _(🚨 blocked for now)_

All tasks above are mostly focused on structure, standards and cleanup.
Here is to look at content

What to look for:

* Review content of titles, descriptions, params, etc.
  * They should be clear to the reader 
* Review vignettes
  * Review content
  * All chunks of code are runnable

Content-related tasks should have a PR against this feature branch.

---------

Signed-off-by: André Veríssimo <211358+averissimo@users.noreply.github.com>
Signed-off-by: Marcin <133694481+m7pr@users.noreply.github.com>
Signed-off-by: kartikeya kirar <kirar.kartikeya1@gmail.com>
Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
Co-authored-by: unknown <kirar.kartikeya1@gmail.com>
Co-authored-by: m7pr <marcin.kosinski.mk1@roche.com>
Co-authored-by: Marcin <133694481+m7pr@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

Author: 5 people

.lintr

@@ -1,5 +1,6 @@
 linters: linters_with_defaults(
   line_length_linter = line_length_linter(120),
   cyclocomp_linter = NULL,
-  object_usage_linter = NULL
+  object_usage_linter = NULL,
+  object_name_linter = object_name_linter(styles = c("snake_case", "symbols"), regexes = c(ANL = "^ANL_?[0-9]*$", ADaM = "^r?AD[A-Z]{2,3}_?[0-9]*$"))
   )

R/Queue.R

@@ -1,27 +1,32 @@
 # Queue ====
 
-#' @title R6 Class - A First-In-First-Out Abstract Data Type
+#' R6 Class - A First-In-First-Out Abstract Data Type
+#' @docType class
+#'
+#' @description
+#' `r lifecycle::badge("experimental")`
 #'
-#' @description `r lifecycle::badge("experimental")`\cr
 #' Abstract data type that stores and returns any number of elements.
 #'
+#' @details
 #' A `Queue` object stores all elements in a single vector,
 #' thus all data types can be stored, but silent coercion may occur.
 #'
 #' Elements are returned in the same order that they were added.
 #'
+#' @name Queue
 #' @keywords internal
 #'
-Queue <- R6::R6Class( # nolint
+Queue <- R6::R6Class( # nolint: object_name_linter.
   classname = "Queue",
   # public methods ----
   public = list(
     #' @description
     #' Adds element(s) to `Queue`.
     #'
-    #' @param new_elements vector of elements to add
+    #' @param new_elements vector of elements to add.
     #'
-    #' @return self invisibly
+    #' @return `self`, invisibly.
     #'
     push = function(new_elements) {
       for (i in seq_along(new_elements)) {
@@ -34,16 +39,16 @@ Queue <- R6::R6Class( # nolint
     #' @description
     #' Returns all contents of the `Queue` object.
     #'
-    #' @return single vector containing all `Queue` contents
+    #' @return Single vector containing all `Queue` contents.
     #'
     get = function() {
       private$array
     },
     #' @description
     #' Returns the first (oldest) element of the `Queue` and removes it.
     #'
-    #' @return
-    #' vector of length 1 containing the first element of `Queue` or NULL if `Queue` is empty
+    #' @return vector of length 1 containing the first element of `Queue`
+    #' or `NULL` if `Queue` is empty.
     #'
     pop = function() {
       returned_element <- self$get()[1L]
@@ -54,9 +59,9 @@ Queue <- R6::R6Class( # nolint
     #' Removes the oldest occurrence of specified element(s) from `Queue`.
     #' Relies on implicit type conversions of R identify elements to remove.
     #'
-    #' @param elements vector of elements to remove from `Queue`
+    #' @param elements vector of elements to remove from `Queue`.
     #'
-    #' @return self invisibly
+    #' @return `self`, invisibly.
     #'
     remove = function(elements) {
       for (el in elements) {
@@ -68,7 +73,7 @@ Queue <- R6::R6Class( # nolint
     #' @description
     #' Removes all elements from `Queue`.
     #'
-    #' @return self invisibly
+    #' @return `self`, invisibly.
     #'
     empty = function() {
       private$array <- c()
@@ -77,17 +82,17 @@ Queue <- R6::R6Class( # nolint
     #' @description
     #' Returns the number of elements in `Queue`.
     #'
-    #' @return integer of length 1
+    #' @return `integer(1)`.
     #'
     size = function() {
       length(self$get())
     },
     #' @description
     #' Prints this `Queue`.
     #'
-    #' @param ... additional arguments to this method, ignored
+    #' @param ... Additional arguments to this method, ignored.
     #'
-    #' @return invisibly self
+    #' @return `self`, invisibly.
     print = function(...) {
       cat(
         sprintf(

R/all_choices.R

@@ -1,9 +1,12 @@
-#' An S3 structure representing the selection of all
-#' possible choices in a `filter_spec`, `select_spec` or `choices_selected` object.
+#' Bare constructor for `all_choices` object
 #'
-#' @description `r lifecycle::badge("experimental")`
+#' @description
+#' `r lifecycle::badge("experimental")`
 #'
-#' @return `all_choices` object
+#' An S3 structure representing the selection of all possible choices in a
+#' `filter_spec`, `select_spec` or `choices_selected` object.
+#'
+#' @return `all_choices` object.
 #'
 #' @examples
 #' # Both structures are semantically identical
@@ -22,6 +25,7 @@
 #' choices_selected(choices = letters, selected = letters)
 #' choices_selected(choices = letters, selected = all_choices())
 #' @export
+#'
 all_choices <- function() {
   structure(list(), class = "all_choices")
 }