include-ig.yaml

# This file can be used by NCPI Whistler's igload script to load the 
# necessary resource components such as vocabulary, IG/Profiles, etc
# which are required by INCLUDE FHIR resources. 
NCPI-FHIR-IG:
  # Source types can include:
  #   - IG - for resources that are the end product of HL7's publisher.jar
  #          application. The IG can be a local path or a published IG
  #   - FILES - for resources that are located on the local disk or urls
  source_type: IG
  # For IGs published to the web, point to the root directory containing the 
  # preferred version of the IG website. There should be a zip file containing 
  # the resource items which will be downloaded and subsequently loaded into 
  # the FHIR server
  url: https://nih-ncpi.github.io/ncpi-fhir-ig
  # 
  # If the IG exists locally on your machine, you can point to that directory
  # instead. This assumes that the products to be loaded are found in the 
  # output directory and have been zipped up according to standard publisher
  # behavior
  # path: /some/local/path/to/ig

  # List of resources to load. If you only care to load CodeSystem and 
  # ValueSets that were produced by publisher, simply comment out the 
  # StructureDefinition option.
  resources: 
  -  CodeSystem
  -  ValueSet
  -  StructureDefinition

  # If there are items that should be ignored, at them to the exclude-wildcards
  # Each entry will be treated as surrounded by wildcards. 
  exclude-wildcards:
  -  example

#    ig-supplement/CodeSystem-ncit.json              
IG-Addendum:
  source_type: FILES
  resources:
    - ../../../summary/summarize-vars/ig-supplement/observation_result_requirement.json
    - ../../../summary/summarize-vars/ig-supplement/observation_definition_code.json  
    - ../../../summary/summarize-vars/ig-supplement/StructureDefinition-study-group.json

NCPI-FHIR-IG-2:
  source_type: IG
  url: https://torstees.github.io/ncpi-fhir-ig-2/

  resources: 
  -  CodeSystem
  -  ValueSet
  -  StructureDefinition
  exclude-wildcards:
  -  example

INCLUDE-Terms:
  source_type: FILES

  # When you want to be selective about the individual resources to load
  # whether they are local file references or URLs, they can be enumerated
  # under resources. 
  resources:
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-clinical-data-source-types.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-experimental-strategy.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-measurement-codes.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-data-access-types.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-family-types.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-participant-lifespan-age.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-data-categories.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-guid-type.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-sample-types.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-data-types.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-study-program.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-study-page-codes.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-expected-data-category.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/CodeSystem-include-study-tables.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/ValueSet-family-types-vs.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/ValueSet-study-program-vs.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/ValueSet-sample-types-vs.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/ValueSet-measurement-vs.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/ValueSet-study-page-codes-vs.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/StructureDefinition-study-page-observation.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/StructureDefinition-contact-detail-institution.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/StructureDefinition-study-program.json
    - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/StructureDefinition-study-page-observation.json
#    - https://www.hl7.org/fhir/us/core/SearchParameter-us-core-race.json
#    - https://www.hl7.org/fhir/us/core/SearchParameter-us-core-ethnicity.json

# holdingoff on this until it's ready
#     - https://raw.githubusercontent.com/include-dcc/include-model-forge/main/output/StructureDefinition-study-dataset.json