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Commits on Apr 18, 2025

• Merge pull request #413 from dbkeator/master

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• fixing up some failing tests

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Commits on Apr 10, 2025

• added support for source_url as a column in derivative CSV files to be used to point to the full derivartive output

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• changed GetDataElements query to return all metadata about the elements

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Commits on Apr 9, 2025

• changed csv2nidm to add nidm:DerivativeCollection to entity types, changed query to accommodate this new derivative type

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• fixed bug with iterating over CSV file and finding subjects in existing nidm file...code was breaking out of outer loop, looping over CSV dataframe instead of continuing.

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• fixed up bug in reading existing nidm document and namespaces getting added when they already exist in the prov document. put in explicit checks in all base classes

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• fixed setup with changed 'main' function in csv2nidm -> csv2nidm_main

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Commits on Apr 8, 2025

• Merge pull request #412 from yarikoptic/bf-codespell

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• adding supporting code for derivatives addition to csv2nidm

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• updating for supporting derivatives with csv2nidm

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• Merge pull request #395 from incf-nidash/dependabot/github_actions/codecov/codecov-action-4

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• [gh-actions](deps): Bump codecov/codecov-action from 3 to 4

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• [DATALAD RUNCMD] Make PyNIDM codespell-clean again

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Commits on Mar 14, 2025

• fixing spellings

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• fixing spellings

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• Merge pull request #411 from incf-nidash/ci/fix_workflows

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• new version of release using auto, create a separate workflow for publishing (uploading to PyPI)

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Commits on Mar 4, 2025

• Merge pull request #410 from dbkeator/master

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• we moved identifiers for project out of the project activity so modified test appropriately

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Commits on Mar 3, 2025

• working on reading/writing nidm files that only contain segmentations and no other project structure.

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• fixed problem with prov:Agent metadata for freesurfer, ants, fsl segmentations in corr datasets which only have segmentations and no other project-level metadata

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• fixed version of pydot

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Commits on Mar 1, 2025

• fixed issue with prov.Document entity requiring a qualified name as the id but we use the full url for isabout data elements which is valid rdf but not somehow supported in prov documents. just an…

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Commits on Feb 28, 2025

• added a function to detect urls and encode them as such in the conversions from old nidm to new nidm files

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• working script to simply move nidm:Project activity metadata to a bids:Dataset collection entity....updates pre 2023 models to current for reprolake data

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Commits on Feb 27, 2025

• working on migration script for old nidm files

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Commits on Dec 10, 2024

• Merge pull request #408 from dbkeator/master

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• added pyontutils to setup.cfg so code could connect to interlex remote

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Commits on Feb 9, 2024

• Merge pull request #396 from dbkeator/master

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• added pyarrow to account for testing errors for python 3.9+ in github actions. Also fixing rdflib to version 6.3.2 to avoid memory leak errors with rdflib's latest releases

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• changed subject key finding to support NIDM JSON map

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Commits on Dec 20, 2023

• Merge pull request #391 from incf-nidash/dependabot/github_actions/actions/setup-python-5

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Commits on Dec 19, 2023

• Merge pull request #394 from dbkeator/master

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• fixing up formatting for lint

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