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@inab

Spanish National Bioinformatics Institute

Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO

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  1. trimal trimal Public

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    C++ 203 47

  2. BIOLITMAP BIOLITMAP Public

    Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

    Python 20 3

  3. WfExS-backend WfExS-backend Public

    Workflow Execution Service Backend

    Python 18 6

  4. openVRE openVRE Public

    Open Virtual Research Environment

    JavaScript 9 3

  5. SmartRNASeqCaller SmartRNASeqCaller Public

    SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data

    Python 7 3

  6. rd-connect-cas-overlay rd-connect-cas-overlay Public archive

    Forked from UniconLabs/simple-cas4-overlay-template

    RD-Connect CAS overlay

    Shell 6 2

Repositories

Showing 10 of 207 repositories
  • research-software-etl Public

    Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

    inab/research-software-etl’s past year of commit activity
    Python 0 AGPL-3.0 0 39 (4 issues need help) 0 Updated May 9, 2025
  • trimal Public

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    inab/trimal’s past year of commit activity
    C++ 203 GPL-3.0 47 34 1 Updated May 9, 2025
  • openVRE-core-dev Public

    Open Virtual Research Environment development version

    inab/openVRE-core-dev’s past year of commit activity
    JavaScript 0 0 0 1 Updated May 9, 2025
  • web_status Public

    Webs status collection

    inab/web_status’s past year of commit activity
    HTML 0 AGPL-3.0 0 0 0 Updated May 7, 2025
  • software-id-benchmark Public

    Benchmarking suite for evaluating software metadata identity resolution using language models

    inab/software-id-benchmark’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated May 6, 2025
  • WfExS-backend Public

    Workflow Execution Service Backend

    inab/WfExS-backend’s past year of commit activity
    Python 18 Apache-2.0 6 23 1 Updated May 5, 2025
  • opeb-pub-enricher Public Forked from inab/opeb-enrichers

    OpenEBench metadata citations enricher

    inab/opeb-pub-enricher’s past year of commit activity
    Python 0 LGPL-2.1 2 0 0 Updated Apr 24, 2025
  • InSoLiTo Public Forked from SergiAguilo/InSoLiTo

    Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking

    inab/InSoLiTo’s past year of commit activity
    Python 2 MIT 2 16 1 Updated Apr 23, 2025
  • wfexs_ega_fetcher Public

    WfExS-backend EGA fetcher

    inab/wfexs_ega_fetcher’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Apr 18, 2025
  • docker-tes-proxy Public

    A docker shim which submits commands to a GA4GH TES service

    inab/docker-tes-proxy’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 16, 2025
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