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Napari doesn't quit when wrapping a local install #307

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hinerm opened this issue Nov 8, 2024 · 3 comments
Open

Napari doesn't quit when wrapping a local install #307

hinerm opened this issue Nov 8, 2024 · 3 comments
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@hinerm
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hinerm commented Nov 8, 2024

Using napari-imagej from main. When I configure napari-imagej to wrap a local Fiji installation, after closing napari the terminal hangs:

image

Thread dump follows:


2024-11-08 16:00:33
Full thread dump OpenJDK 64-Bit Server VM (22.0.1+8 mixed mode, sharing):

Threads class SMR info:
_java_thread_list=0x0000017bc0e67210, length=25, elements={
0x0000017b558ffe80, 0x0000017b55904d40, 0x0000017b559074a0, 0x0000017b55904020,
0x0000017b55901230, 0x0000017b559025e0, 0x0000017b55902c70, 0x0000017b53aa1480,
0x0000017b53aa1b50, 0x0000017b559053d0, 0x0000017b55901f50, 0x0000017b55900510,
0x0000017b5590dda0, 0x0000017b5590bcd0, 0x0000017b55909570, 0x0000017b55909c00,
0x0000017b5590eac0, 0x0000017b55908ee0, 0x0000017b5590a290, 0x0000017b559046b0,
0x0000017b5590c9f0, 0x0000017bc6419ae0, 0x0000017bc641e310, 0x0000017bc641d5f0,
0x0000017bc4e8c220
}

"main" #1 [13104] prio=5 os_prio=0 cpu=859.38ms elapsed=319.90s tid=0x0000017b558ffe80 nid=13104 runnable  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"Reference Handler" #9 [31860] daemon prio=10 os_prio=2 cpu=0.00ms elapsed=319.88s tid=0x0000017b55904d40 nid=31860 waiting on condition  [0x0000005279eaf000]
   java.lang.Thread.State: RUNNABLE
        at java.lang.ref.Reference.waitForReferencePendingList(java.base@22.0.1/Native Method)
        at java.lang.ref.Reference.processPendingReferences(java.base@22.0.1/Reference.java:246)
        at java.lang.ref.Reference$ReferenceHandler.run(java.base@22.0.1/Reference.java:208)

   Locked ownable synchronizers:
        - None

"Finalizer" #10 [9968] daemon prio=8 os_prio=1 cpu=0.00ms elapsed=319.88s tid=0x0000017b559074a0 nid=9968 in Object.wait()  [0x000000527a09e000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait0(java.base@22.0.1/Native Method)
        - waiting on <0x0000000682ca58e0> (a java.lang.ref.NativeReferenceQueue$Lock)
        at java.lang.Object.wait(java.base@22.0.1/Object.java:375)
        at java.lang.Object.wait(java.base@22.0.1/Object.java:348)
        at java.lang.ref.NativeReferenceQueue.await(java.base@22.0.1/NativeReferenceQueue.java:48)
        at java.lang.ref.ReferenceQueue.remove0(java.base@22.0.1/ReferenceQueue.java:158)
        at java.lang.ref.NativeReferenceQueue.remove(java.base@22.0.1/NativeReferenceQueue.java:89)
        - locked <0x0000000682ca58e0> (a java.lang.ref.NativeReferenceQueue$Lock)
        at java.lang.ref.Finalizer$FinalizerThread.run(java.base@22.0.1/Finalizer.java:173)

   Locked ownable synchronizers:
        - None

"Signal Dispatcher" #11 [14532] daemon prio=9 os_prio=2 cpu=0.00ms elapsed=319.88s tid=0x0000017b55904020 nid=14532 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"Attach Listener" #12 [8364] daemon prio=5 os_prio=2 cpu=203.12ms elapsed=319.88s tid=0x0000017b55901230 nid=8364 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"Service Thread" #13 [16568] daemon prio=9 os_prio=0 cpu=0.00ms elapsed=319.88s tid=0x0000017b559025e0 nid=16568 runnable  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"Monitor Deflation Thread" #14 [2480] daemon prio=9 os_prio=0 cpu=0.00ms elapsed=319.88s tid=0x0000017b55902c70 nid=2480 runnable  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"C2 CompilerThread0" #15 [1768] daemon prio=9 os_prio=2 cpu=890.62ms elapsed=319.88s tid=0x0000017b53aa1480 nid=1768 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE
   No compile task

   Locked ownable synchronizers:
        - None

"C1 CompilerThread0" #18 [32612] daemon prio=9 os_prio=2 cpu=250.00ms elapsed=319.88s tid=0x0000017b53aa1b50 nid=32612 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE
   No compile task

   Locked ownable synchronizers:
        - None

"Common-Cleaner" #19 [3292] daemon prio=8 os_prio=1 cpu=0.00ms elapsed=319.67s tid=0x0000017b559053d0 nid=3292 waiting on condition  [0x000000527ae2e000]
   java.lang.Thread.State: TIMED_WAITING (parking)
        at jdk.internal.misc.Unsafe.park(java.base@22.0.1/Native Method)
        - parking to wait for  <0x0000000682ca5d20> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.parkNanos(java.base@22.0.1/LockSupport.java:269)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(java.base@22.0.1/AbstractQueuedSynchronizer.java:1847)
        at java.lang.ref.ReferenceQueue.await(java.base@22.0.1/ReferenceQueue.java:71)
        at java.lang.ref.ReferenceQueue.remove0(java.base@22.0.1/ReferenceQueue.java:143)
        at java.lang.ref.ReferenceQueue.remove(java.base@22.0.1/ReferenceQueue.java:218)
        at jdk.internal.ref.CleanerImpl.run(java.base@22.0.1/CleanerImpl.java:140)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)
        at jdk.internal.misc.InnocuousThread.run(java.base@22.0.1/InnocuousThread.java:186)

   Locked ownable synchronizers:
        - None

"Notification Thread" #20 [19840] daemon prio=9 os_prio=0 cpu=0.00ms elapsed=319.67s tid=0x0000017b55901f50 nid=19840 runnable  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"Python Reference Queue" #28 [21772] daemon prio=5 os_prio=0 cpu=1015.62ms elapsed=319.16s tid=0x0000017b55900510 nid=21772 waiting on condition  [0x000000527c37f000]
   java.lang.Thread.State: TIMED_WAITING (parking)
        at jdk.internal.misc.Unsafe.park(java.base@22.0.1/Native Method)
        - parking to wait for  <0x0000000698006728> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.parkNanos(java.base@22.0.1/LockSupport.java:269)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(java.base@22.0.1/AbstractQueuedSynchronizer.java:1847)
        at java.lang.ref.ReferenceQueue.await(java.base@22.0.1/ReferenceQueue.java:71)
        at java.lang.ref.ReferenceQueue.remove0(java.base@22.0.1/ReferenceQueue.java:143)
        at java.lang.ref.ReferenceQueue.remove(java.base@22.0.1/ReferenceQueue.java:218)
        at org.jpype.ref.JPypeReferenceQueue$Worker.run(Unknown Source)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"Java2D Disposer" #32 [31296] daemon prio=10 os_prio=2 cpu=0.00ms elapsed=316.83s tid=0x0000017b5590dda0 nid=31296 waiting on condition  [0x000000527c94e000]
   java.lang.Thread.State: WAITING (parking)
        at jdk.internal.misc.Unsafe.park(java.base@22.0.1/Native Method)
        - parking to wait for  <0x0000000684ca06d0> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.park(java.base@22.0.1/LockSupport.java:371)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(java.base@22.0.1/AbstractQueuedSynchronizer.java:519)
        at java.util.concurrent.ForkJoinPool.unmanagedBlock(java.base@22.0.1/ForkJoinPool.java:4013)
        at java.util.concurrent.ForkJoinPool.managedBlock(java.base@22.0.1/ForkJoinPool.java:3961)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(java.base@22.0.1/AbstractQueuedSynchronizer.java:1707)
        at java.lang.ref.ReferenceQueue.await(java.base@22.0.1/ReferenceQueue.java:67)
        at java.lang.ref.ReferenceQueue.remove0(java.base@22.0.1/ReferenceQueue.java:158)
        at java.lang.ref.ReferenceQueue.remove(java.base@22.0.1/ReferenceQueue.java:234)
        at sun.java2d.Disposer.run(java.desktop@22.0.1/Disposer.java:145)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"AWT-Windows" #34 [17308] daemon prio=6 os_prio=0 cpu=187.50ms elapsed=316.83s tid=0x0000017b5590bcd0 nid=17308 runnable  [0x000000527cd2f000]
   java.lang.Thread.State: RUNNABLE
        at sun.awt.windows.WToolkit.eventLoop(java.desktop@22.0.1/Native Method)
        at sun.awt.windows.WToolkit.run(java.desktop@22.0.1/WToolkit.java:297)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"Thread-3" #43 [7688] daemon prio=5 os_prio=0 cpu=1921.88ms elapsed=315.54s tid=0x0000017b55909570 nid=7688 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"TimerQueue" #44 [33260] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=304.10s tid=0x0000017b55909c00 nid=33260 waiting on condition  [0x0000005278f2f000]
   java.lang.Thread.State: WAITING (parking)
        at jdk.internal.misc.Unsafe.park(java.base@22.0.1/Native Method)
        - parking to wait for  <0x0000000684ece7b8> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.park(java.base@22.0.1/LockSupport.java:371)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(java.base@22.0.1/AbstractQueuedSynchronizer.java:519)
        at java.util.concurrent.ForkJoinPool.unmanagedBlock(java.base@22.0.1/ForkJoinPool.java:4013)
        at java.util.concurrent.ForkJoinPool.managedBlock(java.base@22.0.1/ForkJoinPool.java:3961)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(java.base@22.0.1/AbstractQueuedSynchronizer.java:1707)
        at java.util.concurrent.DelayQueue.take(java.base@22.0.1/DelayQueue.java:242)
        at javax.swing.TimerQueue.run(java.desktop@22.0.1/TimerQueue.java:165)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - <0x0000000684ece7e0> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)

"D3D Screen Updater" #48 [35124] daemon prio=7 os_prio=1 cpu=0.00ms elapsed=303.23s tid=0x0000017b5590eac0 nid=35124 in Object.wait()  [0x000000527d4ef000]
   java.lang.Thread.State: WAITING (on object monitor)
        at java.lang.Object.wait0(java.base@22.0.1/Native Method)
        - waiting on <no object reference available>
        at java.lang.Object.wait(java.base@22.0.1/Object.java:375)
        at sun.java2d.d3d.D3DScreenUpdateManager.run(java.desktop@22.0.1/D3DScreenUpdateManager.java:425)
        - locked <0x0000000683b6b340> (a java.lang.Object)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"JFR Recorder Thread" #49 [30576] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=140.48s tid=0x0000017b55908ee0 nid=30576 runnable  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE

   Locked ownable synchronizers:
        - None

"JFR Periodic Tasks" #50 [20968] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=140.32s tid=0x0000017b5590a290 nid=20968 in Object.wait()  [0x0000005276e3e000]
   java.lang.Thread.State: TIMED_WAITING (on object monitor)
        at java.lang.Object.wait0(java.base@22.0.1/Native Method)
        - waiting on <no object reference available>
        at java.lang.Object.wait(java.base@22.0.1/Object.java:375)
        at jdk.jfr.internal.PlatformRecorder.takeNap(jdk.jfr@22.0.1/PlatformRecorder.java:558)
        - locked <0x000000068ba2bfc0> (a jdk.jfr.internal.JVM$ChunkRotationMonitor)
        at jdk.jfr.internal.PlatformRecorder.periodicTask(jdk.jfr@22.0.1/PlatformRecorder.java:526)
        at jdk.jfr.internal.PlatformRecorder.lambda$startDiskMonitor$1(jdk.jfr@22.0.1/PlatformRecorder.java:446)
        at jdk.jfr.internal.PlatformRecorder$$Lambda/0x0000017b7b6784b0.run(jdk.jfr@22.0.1/Unknown Source)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"RMI TCP Accept-0" #53 [29856] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=4.83s tid=0x0000017b559046b0 nid=29856 runnable  [0x000000527740e000]
   java.lang.Thread.State: RUNNABLE
        at sun.nio.ch.Net.accept(java.base@22.0.1/Native Method)
        at sun.nio.ch.NioSocketImpl.accept(java.base@22.0.1/NioSocketImpl.java:748)
        at java.net.ServerSocket.implAccept(java.base@22.0.1/ServerSocket.java:695)
        at java.net.ServerSocket.platformImplAccept(java.base@22.0.1/ServerSocket.java:660)
        at java.net.ServerSocket.implAccept(java.base@22.0.1/ServerSocket.java:636)
        at java.net.ServerSocket.implAccept(java.base@22.0.1/ServerSocket.java:582)
        at java.net.ServerSocket.accept(java.base@22.0.1/ServerSocket.java:541)
        at sun.management.jmxremote.LocalRMIServerSocketFactory$1.accept(jdk.management.agent@22.0.1/LocalRMIServerSocketFactory.java:52)
        at sun.rmi.transport.tcp.TCPTransport$AcceptLoop.executeAcceptLoop(java.rmi@22.0.1/TCPTransport.java:424)
        at sun.rmi.transport.tcp.TCPTransport$AcceptLoop.run(java.rmi@22.0.1/TCPTransport.java:388)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - <0x000000068aafc540> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)

"RMI TCP Connection(1)-192.168.68.63" #54 [18940] daemon prio=5 os_prio=0 cpu=15.62ms elapsed=4.82s tid=0x0000017b5590c9f0 nid=18940 runnable  [0x00000052775fe000]
   java.lang.Thread.State: RUNNABLE
        at sun.nio.ch.Net.poll(java.base@22.0.1/Native Method)
        at sun.nio.ch.NioSocketImpl.park(java.base@22.0.1/NioSocketImpl.java:191)
        at sun.nio.ch.NioSocketImpl.timedRead(java.base@22.0.1/NioSocketImpl.java:280)
        at sun.nio.ch.NioSocketImpl.implRead(java.base@22.0.1/NioSocketImpl.java:304)
        at sun.nio.ch.NioSocketImpl.read(java.base@22.0.1/NioSocketImpl.java:346)
        at sun.nio.ch.NioSocketImpl$1.read(java.base@22.0.1/NioSocketImpl.java:796)
        at java.net.Socket$SocketInputStream.implRead(java.base@22.0.1/Socket.java:1108)
        at java.net.Socket$SocketInputStream.read(java.base@22.0.1/Socket.java:1095)
        at java.io.BufferedInputStream.fill(java.base@22.0.1/BufferedInputStream.java:291)
        at java.io.BufferedInputStream.implRead(java.base@22.0.1/BufferedInputStream.java:325)
        at java.io.BufferedInputStream.read(java.base@22.0.1/BufferedInputStream.java:312)
        at java.io.FilterInputStream.read(java.base@22.0.1/FilterInputStream.java:71)
        at sun.rmi.transport.tcp.TCPTransport.handleMessages(java.rmi@22.0.1/TCPTransport.java:580)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(java.rmi@22.0.1/TCPTransport.java:844)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(java.rmi@22.0.1/TCPTransport.java:721)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler$$Lambda/0x0000017b7b6fc748.run(java.rmi@22.0.1/Unknown Source)
        at java.security.AccessController.executePrivileged(java.base@22.0.1/AccessController.java:778)
        at java.security.AccessController.doPrivileged(java.base@22.0.1/AccessController.java:400)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(java.rmi@22.0.1/TCPTransport.java:720)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(java.base@22.0.1/ThreadPoolExecutor.java:1144)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(java.base@22.0.1/ThreadPoolExecutor.java:642)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - <0x000000068a429810> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)
        - <0x000000068abe4a78> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)
        - <0x000000068abe8430> (a java.util.concurrent.ThreadPoolExecutor$Worker)

"RMI Scheduler(0)" #55 [31880] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=4.80s tid=0x0000017bc6419ae0 nid=31880 waiting on condition  [0x00000052777ee000]
   java.lang.Thread.State: TIMED_WAITING (parking)
        at jdk.internal.misc.Unsafe.park(java.base@22.0.1/Native Method)
        - parking to wait for  <0x000000068aaf6278> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
        at java.util.concurrent.locks.LockSupport.parkNanos(java.base@22.0.1/LockSupport.java:269)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(java.base@22.0.1/AbstractQueuedSynchronizer.java:1758)
        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(java.base@22.0.1/ScheduledThreadPoolExecutor.java:1182)
        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(java.base@22.0.1/ScheduledThreadPoolExecutor.java:899)
        at java.util.concurrent.ThreadPoolExecutor.getTask(java.base@22.0.1/ThreadPoolExecutor.java:1070)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(java.base@22.0.1/ThreadPoolExecutor.java:1130)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(java.base@22.0.1/ThreadPoolExecutor.java:642)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"JMX server connection timeout 56" #56 [24932] daemon prio=5 os_prio=0 cpu=0.00ms elapsed=4.79s tid=0x0000017bc641e310 nid=24932 in Object.wait()  [0x00000052779de000]
   java.lang.Thread.State: TIMED_WAITING (on object monitor)
        at java.lang.Object.wait0(java.base@22.0.1/Native Method)
        - waiting on <no object reference available>
        at java.lang.Object.wait(java.base@22.0.1/Object.java:375)
        at com.sun.jmx.remote.internal.ServerCommunicatorAdmin$Timeout.run(java.management@22.0.1/ServerCommunicatorAdmin.java:171)
        - locked <0x000000068a468fe8> (a [I)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - None

"RMI TCP Connection(2)-192.168.68.63" #57 [11928] daemon prio=5 os_prio=0 cpu=15.62ms elapsed=3.70s tid=0x0000017bc641d5f0 nid=11928 runnable  [0x0000005277bce000]
   java.lang.Thread.State: RUNNABLE
        at sun.nio.ch.Net.poll(java.base@22.0.1/Native Method)
        at sun.nio.ch.NioSocketImpl.park(java.base@22.0.1/NioSocketImpl.java:191)
        at sun.nio.ch.NioSocketImpl.timedRead(java.base@22.0.1/NioSocketImpl.java:280)
        at sun.nio.ch.NioSocketImpl.implRead(java.base@22.0.1/NioSocketImpl.java:304)
        at sun.nio.ch.NioSocketImpl.read(java.base@22.0.1/NioSocketImpl.java:346)
        at sun.nio.ch.NioSocketImpl$1.read(java.base@22.0.1/NioSocketImpl.java:796)
        at java.net.Socket$SocketInputStream.implRead(java.base@22.0.1/Socket.java:1108)
        at java.net.Socket$SocketInputStream.read(java.base@22.0.1/Socket.java:1095)
        at java.io.BufferedInputStream.fill(java.base@22.0.1/BufferedInputStream.java:291)
        at java.io.BufferedInputStream.implRead(java.base@22.0.1/BufferedInputStream.java:325)
        at java.io.BufferedInputStream.read(java.base@22.0.1/BufferedInputStream.java:312)
        at java.io.FilterInputStream.read(java.base@22.0.1/FilterInputStream.java:71)
        at sun.rmi.transport.tcp.TCPTransport.handleMessages(java.rmi@22.0.1/TCPTransport.java:580)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(java.rmi@22.0.1/TCPTransport.java:844)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(java.rmi@22.0.1/TCPTransport.java:721)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler$$Lambda/0x0000017b7b6fc748.run(java.rmi@22.0.1/Unknown Source)
        at java.security.AccessController.executePrivileged(java.base@22.0.1/AccessController.java:778)
        at java.security.AccessController.doPrivileged(java.base@22.0.1/AccessController.java:400)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(java.rmi@22.0.1/TCPTransport.java:720)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(java.base@22.0.1/ThreadPoolExecutor.java:1144)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(java.base@22.0.1/ThreadPoolExecutor.java:642)
        at java.lang.Thread.runWith(java.base@22.0.1/Thread.java:1583)
        at java.lang.Thread.run(java.base@22.0.1/Thread.java:1570)

   Locked ownable synchronizers:
        - <0x000000068a7dba00> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)
        - <0x000000068abe86e0> (a java.util.concurrent.locks.ReentrantLock$NonfairSync)
        - <0x000000068abebd00> (a java.util.concurrent.ThreadPoolExecutor$Worker)

"C2 CompilerThread1" #16 [21876] daemon prio=9 os_prio=2 cpu=0.00ms elapsed=0.67s tid=0x0000017bc4e8c220 nid=21876 waiting on condition  [0x0000000000000000]
   java.lang.Thread.State: RUNNABLE
   No compile task

   Locked ownable synchronizers:
        - None

"VM Thread" os_prio=2 cpu=15.62ms elapsed=319.89s tid=0x0000017b53649280 nid=25176 runnable  

"GC Thread#0" os_prio=2 cpu=46.88ms elapsed=319.90s tid=0x0000017b53648ed0 nid=16200 runnable  

"GC Thread#1" os_prio=2 cpu=46.88ms elapsed=319.51s tid=0x0000017b53647500 nid=18976 runnable  

"GC Thread#2" os_prio=2 cpu=15.62ms elapsed=319.51s tid=0x0000017b53644160 nid=8004 runnable  

"GC Thread#3" os_prio=2 cpu=15.62ms elapsed=319.51s tid=0x0000017b5364bec0 nid=1508 runnable  

"GC Thread#4" os_prio=2 cpu=15.62ms elapsed=319.51s tid=0x0000017b5364c270 nid=31040 runnable  

"GC Thread#5" os_prio=2 cpu=31.25ms elapsed=319.51s tid=0x0000017b53646640 nid=21544 runnable  

"GC Thread#6" os_prio=2 cpu=15.62ms elapsed=319.51s tid=0x0000017b5364b000 nid=8864 runnable  

"GC Thread#7" os_prio=2 cpu=0.00ms elapsed=319.51s tid=0x0000017b536453d0 nid=32108 runnable  

"G1 Main Marker" os_prio=2 cpu=0.00ms elapsed=319.90s tid=0x0000017b55af4500 nid=10120 runnable  

"G1 Conc#0" os_prio=2 cpu=0.00ms elapsed=319.90s tid=0x0000017b536448c0 nid=21832 runnable  

"G1 Conc#1" os_prio=2 cpu=0.00ms elapsed=317.71s tid=0x0000017b53649630 nid=32560 runnable  

"G1 Refine#0" os_prio=2 cpu=15.62ms elapsed=319.90s tid=0x0000017b53063fa0 nid=30752 runnable  

"G1 Service" os_prio=2 cpu=0.00ms elapsed=319.90s tid=0x0000017b55a3cd70 nid=12212 runnable  

"VM Periodic Task Thread" os_prio=2 cpu=15.62ms elapsed=319.89s tid=0x0000017b53279f10 nid=28592 waiting on condition  

JNI global refs: 6114, weak refs: 44
@hinerm hinerm added the bug Something isn't working label Nov 8, 2024
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hinerm commented Nov 8, 2024

Note that this started happening even when using other initialization strings (e.g. sc.fiji:fiji:2.13.0) and even when falling back to napari 0.1.0. 😠

@gselzer gselzer mentioned this issue Nov 8, 2024
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gselzer commented Nov 8, 2024

@hinerm does this still happen for you with d9fc267? If so, can you provide a MCVE? I have not found napari hanging with a local install when experimenting on that commit...

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ctrueden commented Nov 8, 2024

Napari doesn't quit

Time to make new T-shirts! 👕

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