pyproject.toml

[build-system]
requires = [ "setuptools>=61.2" ]
build-backend = "setuptools.build_meta"

[project]
name = "napari-imagej"
version = "0.1.1.dev0"
description = "ImageJ functionality from napari"
readme = "README.md"
license = {text = "BSD-2-Clause"}
authors = [{name = "ImageJ2 developers", email = "ctrueden@wisc.edu"}]
keywords = ["java", "imagej", "imagej2", "fiji", "napari"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Framework :: napari",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: Unix",
    "Operating System :: MacOS",
    "License :: OSI Approved :: BSD License",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Image Processing",
    "Topic :: Scientific/Engineering :: Visualization",
    "Topic :: Software Development :: Libraries :: Java Libraries",
    "Topic :: Software Development :: Libraries :: Python Modules",
]

# NB: Keep this in sync with environment.yml AND dev-environment.yml!
requires-python = ">=3.8, <3.13"
dependencies = [
    "confuse >= 2.0.0",
    "imglyb >= 2.1.0",
    "jpype1 >= 1.4.1",
    "labeling >= 0.1.12",
    "magicgui >= 0.5.1",
    "napari >= 0.4.17",
    "numpy",
    "pandas",
    "pyimagej >= 1.4.1",
    "scyjava >= 1.9.1",
    "xarray < 2024.10.0",
    # Version rules to avoid problems
    "qtconsole != 5.4.2", # https://github.com/napari/napari/issues/5700
    "typing_extensions != 4.6.0", # https://github.com/pydantic/pydantic/issues/5821
]

[project.optional-dependencies]
# NB: Keep this in sync with dev-environment.yml!
# Development tools
dev = [
    "build",
    "myst-parser",
    "pre-commit",
    "pyqt5",
    "pytest",
    "pytest-cov",
    "pytest-env",
    "pytest-qt",
    "ruff",
    "sphinx",
    "sphinx-copybutton",
    "sphinx-rtd-theme",
    "qtpy",
    "validate-pyproject[all]",
]

[project.urls]
homepage = "https://github.com/imagej/napari-imagej"
documentation = "https://napari-imagej.readthedocs.io"
source = "https://github.com/imagej/napari-imagej"
download = "https://pypi.org/project/napari-imagej/#files"
tracker = "https://github.com/imagej/napari-imagej/issues"

[project.entry-points."napari.manifest"]
napari-imagej = "napari_imagej:napari.yml"

[tool.setuptools]
package-dir = {"" = "src"}
include-package-data = true

[tool.setuptools.packages.find]
where = ["src"]

# ruff configuration
[tool.ruff]
line-length = 88
src = ["src", "tests"]
include = ["pyproject.toml", "src/**/*.py", "tests/**/*.py"]
extend-exclude = ["bin", "build", "dist", "doc", "scripts"]

[tool.ruff.lint]
extend-ignore = ["E203"]

[tool.ruff.lint.per-file-ignores]
# Ignore `E402` (import violations) in all `__init__.py` files, and in `path/to/file.py`.
"__init__.py" = ["E402", "F401"]

[tool.pytest.ini_options]
addopts = "-s -p no:faulthandler"
env = [
    "NAPARI_IMAGEJ_TESTING=yes",
    "NAPARI_IMAGEJ_JVM_COMMAND_LINE_ARGUMENTS=-Dfoo=bar",
]