| title | section |
|---|---|
Hackathons |
Explore:Events |
In the context of ImageJ, a {% include wikipedia title='Hackathon' text='hackathon'%} is a coding spree, or if you want, a one or two-week brainstorm session where scientists with programming skills sit together and work in a low-distraction, high-energy environment to advance the software side of their research. Typically, results get accomplished much faster (read: days instead of weeks or months) than without hackathons, because the setting is ideal to discuss advanced ideas with similar-thinking scientists and ideas can sprout much faster. Sometimes, results are achieved that would not have been possible without a hackathon at all.
{% include video platform='youtube' id='ZDZvoJX3PDM' footer='The "hackathon effect" in effect!' %}
First and foremost, hackathons are fun. The participants like what they are working on, and rarely have the same opportunities to talk to and inspire each other about their ongoing research.
Also, hackathons are the perfect excuse to concentrate on a particular subject without distractions. A lot gets done at a hackathon (see right!).
The term comes from the original meaning of {% include wikipedia title='Hack %28technology%29' text='hack'%}, i.e. a clever and unforeseen way to use or improve a technical system.
It is {% include wikipedia title='Hackathon' text='not clear whether Sun's marketing team or OpenBSD were first'%}, combining the words hack and marathon to form hackathon.
Ever since, OpenBSD held annual hackathons during which OpenBSD was improved in leaps and bounds.
In 2007, the first hackathon revolving around neuro-science was taking place at HHMI Janelia Research Campus. In a sense, it can be seen as the first Fiji hackathon, since Fiji was born in the wake of that hackathon, and probably would not have happened without it.
ImageJ has benefitted from many hackathons over the years:
{::nomarkdown}
|
When |
Where |
Who |
Topic |
|---|---|---|---|
|
HHMI Janelia |
{% include person-list ids='acardona|bene51|jefferis|hanchuan|dscho|StephanPreibisch|axtimwalde|rasband|Arnim Jenett|Julie Simpson|Torsten Rohlfing|Yuriy Mishchenko' %} |
Neuroscience |
|
|
MPI-CBG |
{% include person-list ids='acardona|bene51|ysis|chalkie666|frederikfly|tinevez|dscho|hinerm|StephanPreibisch|axtimwalde|tomancak' %} |
||
|
2008 Dec 8 - |
INI |
? |
|
|
MPI-CBG |
{% include person-list ids='dscho|acardona|tinevez|bene51|iarganda|chalkie666|hinerm|tomancak|StephanPreibisch|axtimwalde|Raju Tomer|Misha Kudryashev' %} |
Segmentation |
|
|
EMBL |
{% include person-list ids='acardona|axtimwalde|bene51|miura|ctrueden|dscho|iarganda|larrylindsey|hinerm|StephanPreibisch|tnargsirrah|vkaynig' %} |
||
|
2010 Oct 12 - |
LBNL |
{% include person-list ids='frederikfly|dscho' %} |
Running Micro-Manager inside Fiji |
|
WID |
{% include person-list ids='iarganda|paulbarber|acardona|bdezonia|arthuredelstein|afraser|frederikfly|grislis|tnargsirrah|hinerm|luisibanez|LeeKamentsky|larrylindsey|melissalinkert|hinerm|tpietzsch|StephanPreibisch|ctrueden|axtimwalde|dscho|bene51|tomancak|eliceiri|ricklentz|Mark Rowley' %} |
Multidimensional visualization |
|
|
MPI-CBG |
{% include person-list ids='jburel|Stephane-D|bdezonia|dietzc|mdoube|Fab14|frederikfly|hornm|chalkie666|tomka|alex-krull|melissalinkert|hinerm|joshmoore|tpietzsch|StephanPreibisch|ctrueden|dscho|bene51|tomancak|Peter-Gabriel-Pitrone|eliceiri|Fernando Carrilo|Jiri Matas|Jurgen Mayer' %} |
Interoperability |
|
|
2012 Oct |
Universität Konstanz |
{% include person-list ids='hornm|dietzc|tpietzsch|dscho' %} |
|
|
2013 Jan 22 - |
LOCI |
{% include person-list ids='thewtex|ctrueden|dscho|hinerm' %} |
{% include github org='scifio' repo='scifio-imageio' label='SCIFIO ImageIO plugin' %} |
|
LOCI |
{% include person-list ids='iarganda|dscho|ctrueden' %} |
||
|
LOCI |
{% include person-list ids='StephanPreibisch|tpietzsch|ctrueden|dscho|bdezonia|hinerm|grislis' %} |
||
|
2013 Sep 9 - |
Institut Pasteur |
{% include person-list ids='tpietzsch|tinevez' %} |
|
|
2013 Nov 14 - |
LOCI |
{% include person-list ids='dietzc|dscho|ctrueden' %} |
|
|
Universität Konstanz |
{% include person-list ids='ctrueden|dscho|dietzc|hornm' %} |
ImageJ Ops |- valign="top" | |
|
|
2014 Mar 20 - |
LOCI |
{% include person-list ids='jburel|pwalczysko|ctrueden' %} |
{% include github org='imagej' repo='imagej-omero' label='ImageJ-OMERO' %} |
|
2014 Jul 7 - |
LOCI |
{% include person-list ids='marktsuchida|ChrisWeisiger|dscho|stuyvenberg|ctrueden|hinerm' %} |
|
|
LOCI |
{% include person-list ids='dietzc|bnorthan|hinerm|ctrueden|apal4|yuminguw|awalter17|Ginger Pocock' %} |
||
|
2014 Oct 13 - |
LOCI |
{% include person-list ids='tpietzsch|StephanPreibisch|axtimwalde|dscho|ctrueden|hinerm' %} |
|
|
2015 Jan 19 - |
FREIRÄUME |
{% include person-list ids='dietzc|ctrueden|hinerm|LeeKamentsky|tpietzsch|fjug|dscho|iarganda|gab1one|seebacherd|kmader|angrauma|Squareys|tibuch|patrick-winter-knime|AndreasBurger|Tobias Kötter' %} |
ImageJ Ops + KNIME + CellProfiler + more |
|
2015 Apr 12 - |
HHMI Janelia |
{% include person-list ids='StephanPreibisch|tpietzsch|axtimwalde|tomancak' %} |
|
|
2015 June 29 - |
BIMSB/MDC |
{% include person-list ids='StephanPreibisch|dietzc|emmenlau|StephanJanosch' %} |
Parallelization of Multiview-Reconstruction |
|
HHMI Janelia |
{% include person-list ids='axtimwalde|ctrueden|hinerm|tpietzsch|tomka|bhoeckendorf|fernandoamat|Phillip Keller' %} |
SCIFIO performance and generality |
|
|
{% include person-list ids='ctrueden|hinerm|dietzc|tpietzsch|axtimwalde|bnorthan|fjug|thewtex|jaywarrick|tferr|biovoxxel|etadobson|awalter17|lnyng|yuminguw|guneetsinghmehta|Bio7|kbellve|Akramhar|miura|marktsuchida|ChrisWeisiger' %} |
ImageJ2 Learnathon + ImageJ Ops |
||
|
KNIME Konstanz Regional Office |
{% include person-list ids='dietzc|ctrueden|hinerm|hornm|tpietzsch|fjug|royerloic|skalarproduktraum|haesleinhuepf|stelfrich|kmader|kephale|imagejan|drtjre|tibuch|Squareys|seebacherd|patrick-winter-knime|AlexanderFillbrunn|Nico Hoffmann|Timo Sachsenberg|Julianus Pfeuffer|Temesgen H. Dadi' %} |
KNIME Image Processing |
|
|
HHMI Janelia |
{% include person-list ids='axtimwalde|tpietzsch|ctrueden|dietzc|kephale' %} |
Metadata rich images |
|
|
KNIME Konstanz Regional Office |
{% include person-list ids='dietzc|patrick-winter-knime|tpietzsch|skalarproduktraum|ctrueden|hornm|stelfrich|kephale|rimadoma|kmader|AndreasBurger|MarcelWiedenmann|SimonSchmid|irrwitz|Squareys|AlexanderFillbrunn|imagejan|tibuch|StefanoWoerner|cmongis|hoerldavid|Nico Hoffmann' %} |
KNIME Image Processing + 3D viz |
|
|
MPI-CBG |
{% include person-list ids='fjug|tpietzsch|tomancak|ctrueden|axtimwalde|hanslovsky|kephale|rimadoma|tinevez|dietzc|patrick-winter-knime|skalarproduktraum|royerloic|haesleinhuepf|hkmoon|tibuch|MarcelWiedenmann|hoerldavid|milkyklim|maarzt|xulman|chaubold|Jonas Massa' %} |
||
|
2017 Feb 21 - |
LOCI |
{% include person-list ids='tpietzsch|axtimwalde|dietzc|ctrueden|awalter17' %} |
|
|
2017 Jun 7 - |
LOCI |
{% include person-list ids='dietzc|ctrueden' %} |
|
|
KNIME Konstanz Regional Office |
{% include person-list ids='dietzc|maarzt|tibuch|imagejan|gab1one|AlexanderFillbrunn|Jon Fuller|Squareys|chaubold|stelfrich|hornm|fjug|Treiblesschorle|milkyklim|kmader|Julianus Pfeuffer|tpietzsch|mp007|StephanPreibisch|Jonas Probst|René Rahn|ctrueden|SimonSchmid|frauzufall|xulman|MarcelWiedenmann|HedgehogCode|patrick-winter-knime' %} |
KNIME Image Processing, ImageJ Ops, Ilastik |
|
|
2017 Oct 17 - |
UConn Health |
{% include person-list ids='jcschaff|ctrueden' %} |
|
|
MPI-CBG |
{% include person-list ids='fjug|tpietzsch|tomancak|ctrueden|hanslovsky|kephale|rimadoma|tinevez|dietzc|skalarproduktraum|royerloic|haesleinhuepf|hkmoon|tibuch|MarcelWiedenmann|hoerldavid|milkyklim|maarzt|xulman|chaubold|PetrBainar|awalter17' %} |
||
|
2018 Apr 22 - |
University of Idaho |
{% include person-list ids='kephale|axtimwalde|dietzc|ctrueden|maarzt|tpietzsch|royerloic|bnorthan|skalarproduktraum|marktsuchida|Robert Wiese' %} |
|
|
2018 May 16 - |
Galvanize |
{% capture content %} Dan Toloudis (AICS)|Dyche Mullins (UCSF)|Lisa Harrylock (AICS)|Tom Goddard (UCSF)|Molly Maleckar (AICS)|Tom Ferrin (UCSF)|Graham Johnson (AICS)|Samuel Lord (UCSF/HHMI)|Basu Chaudhuri (AICS)|Ambrose Carr (CZI)|Megan Riel-Megan (AICS)|Jeremy Freeman (CZI)|Dave Williams (AICS)|Nicholas Sofroniew (CZI)|{% include person id='ctrueden' %}|Arne Bakker (CZI)|Syuan-Ming Guo (CZ Biohub)|Andréa Clavijo (CZI)|Deep Ganguli (CZI)|Shalin Mehta (CZ Biohub)|Tony Tung (CZI)|Sarah Kefayati (CZ Biohub)|Anitha Krishnan (CZ Biohub)|{% include person id='0x00b1' %}|Norah Klintberg (CZ Biohub)|Eric Perlman (Johns Hopkins)|Oana Carja (CZ Biohub) Benny Lin (U Texas Austin)|Jeremy Maitlen-Shephard (Google) {% endcapture %} {% include person-list ids=content %} |
Bioimage Analysis in JavaScript, Python + Java |
|
2018 Oct 31 - |
LOCI |
{% include person-list ids='dietzc|tpietzsch|marktsuchida|ctrueden' %} |
ImgLib2, Micro-Manager |
|
MPI-CBG |
{% include person-list ids='ctrueden|chaubold|dietzc|gab1one|HedgehogCode|MarcelWiedenmann|maarzt|frauzufall|tpietzsch|skalarproduktraum|turekg' %} |
Hacking |
|
|
IT4Innovations |
{% include person-list ids='fjug|tpietzsch|tomancak|dietzc|tibuch|MarcelWiedenmann|maarzt|xulman|PetrBainar|awalter17|gab1one|Treiblesschorle|mp007|frauzufall|HedgehogCode|bogovicj|NicoKiaru|Jana Klímová|kozusznik|Michal Krumnikl|Manan Lalit|emilmelnikov|Pavel Moravec|Václav Svatoň|tischi|turekg|Tomas Vicar|Marwan Zouinkhi' %} |
||
|
2019 Sep 18 - |
KNIME Konstanz Regional Office |
{% include person-list ids='mr-c|sverhoeven|ctrueden|dietzc|tpietzsch|MarcelWiedenmann|DanielBogenrieder|frauzufall|HedgehogCode|AtR1an|LauLauThom|KFDing|ChristianAlbrecht|gab1one|Treiblesschorle' %} |
|
|
2019 Dec 9 - |
CSB Dresden |
{% include person-list ids='hanslovsky|ctrueden|tpietzsch|skalarproduktraum|tibuch|fjug|thewtex|stelfrich|haesleinhuepf|MarcelWiedenmann|emilmelnikov|oeway|xulman|tomancak|uschmidt83|frauzufall|HedgehogCode|NicoKiaru|mangalp|m-novikov|tischi|MLbyML|BobHanson|wolny|turekg|tomasvicar|davidackerman|lagru|axon900|arrmunoz' %} |
|
|
Online (Gather Town) organized by |
{% include person-list ids='tomancak|kozusznik|Michal Krumnikl|pm-cz|xulman|Dimitrios Stefanos Velissariou|Václav Svatoň|tischi|tpietzsch|ctrueden|imagejan|axtimwalde|frauzufall|oeway|bogovicj|marktsuchida|tinevez|LeeKamentsky|joshmoore|biovoxxel|sbesson|kephale|lannybroo|jburel|Nils Norlin|Estibaliz Gomez de Mariscal' %} |
||
|
2022 Sep 5 - |
Prague, Czechia |
{% include person-list ids='ksugar|tischi|tpietzsch|kozusznik|xulman' %} |
|
|
2022 Oct 3 - |
LOCI |
{% include person-list ids='gnodar01|hinerm|ctrueden|elevans|gselzer' %} |
|
|
2022 Dec 5 - |
LOCI |
{% include person-list limit=4 ids='oeway|hinerm|ctrueden|elevans' %} |
ImageJ in the cloud |
|
Human Technopole |
{% include person-list ids='beatrizserrano|carlosuc3m|cfusterbarcelo|tischi|ctrueden|dasv74|davidackerman|elevans|finglis|fjug|cateek|ivan-ea|tinevez|jdeschamps|lmoyasans|hinerm|mkitti|petebankhead|axtimwalde|tpietzsch|oeway' %} |
Accessibility of deep learning models from Java |
|
|
2023 Apr 15 - |
LOCI |
{% include person-list ids='tinevez|tpietzsch|ctrueden|hinerm|elevans|gselzer' %} |
TrackMate in 3D |
|
SciLifeLab |
{% include person-list ids='oeway|carlosuc3m|cfusterbarcelo|ctrueden|JonasKlotz|thewtex|gnodar01|HedgehogCode|Craig Russell|Andréa Papaleo|Simon Franchini|Tomaz Fogaça Vieira|Sebastian Soyer|Weize Xu|Iván Hidalgo|Vera Galinova' %} |
Web and Cloud Infrastructure for AI-Powered BioImage Analysis |
|
|
CSB Dresden |
{% include person-list ids='skalarproduktraum|kephale|ctrueden|elect86|Lukas Tempel|Jan Tiemann|tpietzsch|Ella Hierche|Samuel Pantze|xulman|Justin Buerger|Aryaman Gupta|Druhin Abrol|Wissal Salhi|Chiara Notaro' %} |
||
|
2023 Jul 21 - |
Fairmont San Francisco |
{% include person-list ids='jni|Czaki|andy-sweet|brisvag|kevinyamauchi|GenevieveBuckley|royerloic|jluethi|kephale|ctrueden' %} |
|
|
CEITEC MU |
{% include person-list ids='nornil|xulman|StephanPreibisch|ctrueden|lleplat|minnerbe|mzouink|ekatrukha|Alanocallaghan|ksugar|elect86|smlpt|tpietzsch|trautmane|skalarproduktraum|frauzufall|carlosuc3m|stefanhahmann|Gabor Kovacs|Wojciech Jesionek|Johannes Girstmair|axtimwalde' %} |
ImgLib2 and BigDataViewer |