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rust or library version? #3

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wmannis opened this issue Aug 26, 2022 · 2 comments
Open

rust or library version? #3

wmannis opened this issue Aug 26, 2022 · 2 comments

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@wmannis
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wmannis commented Aug 26, 2022

I am trying to install this software for one of our researchers, and have run into a failure in the compilation, using several versions of rust (1.63 at the moment). Unfortunately, I'm not at all familiar with rust. Does this error suggest a versioning problem?

Compiling clap v3.0.0-beta.2
Compiling jfs v0.6.2
Compiling ppgg v0.1.5 (/misc/s/pkg/linux64/vcf2prot/vcf2prot)
error[E0599]: no method named help found for struct Arg in the current scope
--> src/parts/cli.rs:201:10
|
201 | .help("A VCF File containing the consequences calling for each sample.")
| ^^^^ method not found in Arg<'_>

error[E0599]: no method named help found for struct Arg in the current scope
--> src/parts/cli.rs:207:10
|
207 | .help("A VCF File containing the reference proteome with transcript id as identifiers and protein sequences as the body.")
| ^^^^ method not found in Arg<'_>

error[E0599]: no method named help found for struct Arg in the current scope
--> src/parts/cli.rs:213:10
|
213 | .help("The path to a directory where fasta files will be written.")
| ^^^^ method not found in Arg<'_>

@HeshamElAbd
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Hi,

Can you please tell me which VCF2Prot version are you using, for example, CPU or the experimental GPU versions? Also, precompiled versions are available along with a docker container. Just send me the information and we can work on it together.

Best,
Hesham

@wmannis
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wmannis commented Aug 29, 2022

I'm trying to compile the CPU version, on CentOS 7.9.

I didn't notice the precompiled version, and that runs for us.

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