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It contains: file name of the file; one PRIDE entry can contain multiple mzIdentML files id ID of a specific residue pair in one mzIdentML file. If there are multiple files IDs might overlap.
Since we already have _ihm_cross_link_list.dataset_list_id which points (best case) to PRIDE accession code, we can further expand it to include evindence_file and evidence_id. I suggest we keep file and id to be consistent with PRIDE, but evidence can be replaced with something more suitable.
Both columns can be populated by the depositor, but the more realistic scenario is that it will be done automatically during the deposition.
The text was updated successfully, but these errors were encountered:
To improve the integration with raw crosslinking-MS data Andrea proposed adding an
evidence
orprovenance
column to the_ihm_cross_link_list
table.Here is an example of the current API response:
It contains:
file
name of the file; one PRIDE entry can contain multiple mzIdentML filesid
ID of a specific residue pair in one mzIdentML file. If there are multiple files IDs might overlap.Since we already have
_ihm_cross_link_list.dataset_list_id
which points (best case) to PRIDE accession code, we can further expand it to includeevindence_file
andevidence_id
. I suggest we keepfile
andid
to be consistent with PRIDE, butevidence
can be replaced with something more suitable.Both columns can be populated by the depositor, but the more realistic scenario is that it will be done automatically during the deposition.
The text was updated successfully, but these errors were encountered: