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Commits on Jan 2, 2024

• Merge pull request #22 from icgc-argo-workflows/normalization@0.1.0

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Commits on Jul 19, 2022

• *.nf updated

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• Merge pull request #21 from icgc-argo-workflows/salmon@0.1.0

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• parameter name updated

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• Merge pull request #20 from icgc-argo-workflows/stringtie@0.1.0

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• stringtie.nf updated

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• Merge pull request #19 from icgc-argo-workflows/normalization@0.1.0

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• Merge branch 'normalization@0.1.0' of github.com:icgc-argo-workflows/rna-seq-expression-counting into normalization@0.1.0

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• repository url udpated

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• repository url updated

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• UQ updated (raise Warning if over 90% of values are NaN

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Commits on Jul 18, 2022

• Merge pull request #17 from icgc-argo-workflows/htseq@0.1.0

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• Merge pull request #16 from icgc-argo-workflows/salmon@0.1.0

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• expected output updated

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• R Bioconductor version specified

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• htseq output parsing updated

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• docker updated

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• python 3.7

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• pysam installed through pip

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• htseq.nf updated

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• test_file updated for htseq

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• Docker file for htseq updated

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Commits on Jul 13, 2022

• Merge pull request #18 from icgc-argo-workflows/stringtie@0.1.0

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• Merge branch 'htseq@0.1.0' of github.com:icgc-argo-workflows/rna-seq-expression-counting into htseq@0.1.0

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• R-base, BioConductor version specified in salmon

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• Stringtie: Remove unnecessary installations

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• HTseq version specified

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Commits on Jun 13, 2022

• fixed wfpm package name

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• fixed wfpm package name

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Commits on Jun 8, 2022

• Merge branch 'main' of github.com:icgc-argo-workflows/rna-seq-expression-counting into main

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• Merge branch 'htseq@0.1.0' into main

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• Merge branch 'normalization@0.1.0' into main

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• Merge pull request #15 from icgc-argo-workflows/htseq@0.1.0

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• Add files via upload

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• Merge pull request #14 from icgc-argo-workflows/salmon@0.1.0

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