CI.yml

# This is a basic workflow to help you get started with Actions

name: CI

# Controls when the action will run.
on:
  # Triggers the workflow on push or pull request events but only for the master branch

  pull_request:
    branches: [main]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

  # # Run tests every month
  # schedule:
  #   - cron: '0 0 1 * *'

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # This workflow contains a single job called "build"
  linux:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    strategy:
      matrix:
        include:
          - name: "Ubuntu OpenMPI g++"
            CC_COMPILER: gcc
            CXX_COMPILER: g++
            container: "ubuntu_gcc_openmpi"
            MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
            USE_SANITIZER: ""
            # ASAN_OPTIONS: "ASAN_OPTIONS=detect_leaks=0" # issue probably with openmpi
            CMAKE_BUILD_TYPE: Debug
            CODE_COVERAGE: "OFF"
            DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

          - name: "Ubuntu OpenMPI clang++"
            CC_COMPILER: clang
            CXX_COMPILER: clang++
            container: "ubuntu_clang_openmpi"
            MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
            USE_SANITIZER: ""
            CMAKE_BUILD_TYPE: Debug
            CODE_COVERAGE: "OFF"
            DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

          - name: "Ubuntu MPICH g++"
            CC_COMPILER: gcc
            CXX_COMPILER: g++
            container: "ubuntu_gcc_mpich"
            MPIEXEC_PREFLAGS: ""
            USE_SANITIZER: "Address"
            ASAN_OPTIONS: ""
            CMAKE_BUILD_TYPE: Debug
            DOCKER_OPTIONS: " "
            CODE_COVERAGE: "ON"

          - name: "Ubuntu MPICH clang++"
            CC_COMPILER: clang
            CXX_COMPILER: clang++
            container: "ubuntu_clang_mpich"
            MPIEXEC_PREFLAGS: ""
            USE_SANITIZER: "Address"
            ASAN_OPTIONS: ""
            CMAKE_BUILD_TYPE: Debug
            DOCKER_OPTIONS: " "
            CODE_COVERAGE: "OFF"

          # Hangs up on github
          - name: "Debian OpenMPI g++"
            CC_COMPILER: gcc
            CXX_COMPILER: g++
            container: "debian_gcc_openmpi"
            MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
            USE_SANITIZER: ""
            # ASAN_OPTIONS: "ASAN_OPTIONS=detect_leaks=0" # issue probably with openmpi
            CMAKE_BUILD_TYPE: Debug
            CODE_COVERAGE: "OFF"
            DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

          - name: "Debian OpenMPI clang++"
            CC_COMPILER: clang
            CXX_COMPILER: clang++
            container: "debian_clang_openmpi"
            MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
            USE_SANITIZER: ""
            CMAKE_BUILD_TYPE: Debug
            CODE_COVERAGE: "OFF"
            DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

          - name: "Debian MPICH g++"
            CC_COMPILER: gcc
            CXX_COMPILER: g++
            container: "debian_gcc_mpich"
            MPIEXEC_PREFLAGS: ""
            USE_SANITIZER: "Address"
            ASAN_OPTIONS: ""
            CMAKE_BUILD_TYPE: Debug
            DOCKER_OPTIONS: " "
            CODE_COVERAGE: "OFF"

          - name: "Debian MPICH clang++"
            CC_COMPILER: clang
            CXX_COMPILER: clang++
            container: "debian_clang_mpich"
            MPIEXEC_PREFLAGS: ""
            USE_SANITIZER: "Address"
            ASAN_OPTIONS: ""
            CMAKE_BUILD_TYPE: Debug
            DOCKER_OPTIONS: " "
            CODE_COVERAGE: "OFF"

    container:
      image: pierremarchand/htool_testing_environments:${{ matrix.container }}
      options: --user root ${{ matrix.DOCKER_OPTIONS }}
      env:
        OMPI_CC: ${{ matrix.CC_COMPILER }}
        OMPI_CXX: ${{ matrix.CXX_COMPILER }}
        CC: ${{ matrix.CC_COMPILER }}
        CXX: ${{ matrix.CXX_COMPILER }}

    name: CI (${{ matrix.name }})

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
      - name: Checkout htool
        uses: actions/checkout@v3
        with:
          path: "htool"
          # ref: 14d013835eceb940b9b51dd90462fe67834db777
          fetch-depth: 0 # to get tags
      - name: Checkout hpddm
        run: |
          git clone https://github.com/hpddm/hpddm.git hpddm
          cd hpddm && git checkout 5890d5addf3962d539dc25c441ec3ff4af93b3ab
        # uses: actions/checkout@v3
        # with:
        #   path: "hpddm"
        #   repository: hpddm/hpddm
        #   ref: afb9562c9c6673d9ff760985b104ef8d4caa3621

      - name: Activate virtualenv
        run: |
          . /usr/local/share/venv/bin/activate
          echo PATH=$PATH >> $GITHUB_ENV

      - name: Build tests
        run: |
          cd htool && mkdir build && cd build
          cmake -DHTOOL_WITH_EXAMPLES=ON -DHTOOL_WITH_DOC=ON -DHTOOL_WITH_STRICT_TESTS=ON -DMPIEXEC_PREFLAGS="${{ matrix.MPIEXEC_PREFLAGS }}" -DUSE_SANITIZER=${{ matrix.USE_SANITIZER }} -DCMAKE_BUILD_TYPE=${{ matrix.CMAKE_BUILD_TYPE }} -DCODE_COVERAGE=${{ matrix.CODE_COVERAGE }} ../
          make -j 4 build-tests

      - name: Run tests
        run: |
          cd htool/build
          export OMP_NUM_THREADS=2
          ${{ matrix.ASAN_OPTIONS }} ctest -j 4 --output-on-failure

      - name: Build examples
        run: |
          cd htool/build
          make -j 4 build-examples

      - name: Build documentation
        run: |
          cd htool/build
          make doc

      - name: Check c++ format
        uses: DoozyX/clang-format-lint-action@v0.16.2
        with:
          source: 'htool/include htool/tests'
          # exclude: './third_party ./external'
          extensions: 'hpp,cpp'
          clangFormatVersion: 16
          style: file

      - name: Check cmake format
        run: |
          . /usr/local/share/venv/bin/activate
          cd htool/build
          make cmake-format
          git diff --exit-code

      - name: Generate coverage reports
        if: matrix.CODE_COVERAGE == 'ON'
        run: |
          cd htool/
          lcov --capture --base-directory ./ --directory build/ --output-file coverage.info
          lcov --remove  coverage.info '/usr/*' '*/hpddm/*' --output-file  ../coverage.info

      - uses: actions/upload-artifact@v4
        with:
          path: coverage.info
          if-no-files-found: error
        if: matrix.CODE_COVERAGE == 'ON'

      # - name: Upload coverage to Codecov
      #   if: matrix.CODE_COVERAGE == 'ON'
      #   uses: codecov/codecov-action@v4.5.0
      #   with:
      #     fail_ci_if_error: true
      #     files: htool/coverage.info
      #     token: ${{ secrets.CODECOV_TOKEN }}
      #     verbose: true

  coverage:
    runs-on: ubuntu-latest
    if: ${{ success() }}
    needs: [ linux ]
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - uses: actions/download-artifact@v4
      - name: Upload coverage report
        uses: codecov/codecov-action@v4
        with:
          file: ./coverage.info
          token: ${{ secrets.CODECOV_TOKEN }}
          verbose: true