pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools", "setuptools_scm[toml]>=6.2"]

[project]
authors = [{name = "Michael Hoffman", email = "michael.hoffman@utoronto.ca"}]
classifiers = [
  "Natural Language :: English",
  "Development Status :: 5 - Production/Stable",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: GNU General Public License v2 (GPLv2)",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Operating System :: Unix",
  "Programming Language :: Python :: 3",
]
dependencies = [
  "autolog>=0.2.0",
  "colorbrewer>=0.2.0",
  "drmaa>=0.4a3",
  "genomedata>=1.7",
  "numpy",
  "optbuild>=0.2.0",
  "optplus>=0.2.0",
  "path.py>=11",
  "six",
  "tables>2.0.4",
  "textinput>=0.2.0",
]
description = "Segway is a tool for easy pattern discovery and identification in functional genomics data."
dynamic = ["version"]
name = "segway"
readme = "README.md"
requires-python = ">=3.9"

[project.license]
text = "GPL-2.0-only"

[project.scripts]
segway = "segway.run:main"
segway-layer = "segway.layer:main"
segway-task = "segway.task:main"
segway-winner = "segway.winner:main"

[project.urls]
"Bug Tracker" = "https://github.com/hoffmangroup/segway/issues"
"Download" = "https://pypi.python.org/pypi/segway"
"Homepage" = "https://hoffmanlab.org/proj/segway"

[tool.setuptools]
# Override setuptools autodiscovery algorithm
packages = ["segway", "segway.data", "segway.cluster"]

# Enable version inference from scm
[tool.setuptools_scm]

[tool.mypy]
ignore_missing_imports = true

[tool.isort]
combine_star = true
float_to_top = true
force_single_line = false
profile = "google"
py_version = 3