chromosome broke my pigeonholes @ defiant.c line 1381.

[harish0201]

Hi,

I'm running the tool on bismark coverage reports.

This is a draft genome assembly annotated using augustus. I have tried giving the gtf, gff and converted the gff to genePred format as well. All the three cases the error is being raised.

The features annotated in the gff file are as follows, over approximately 5000 scaffolds.

CDS
gene
intron
start_codon
stop_codon
transcript

[hhg7]

hi @harish0201 I'll get to the problem tonight, I've got a lot on my plate. Thanks for helping to make Defiant better

[harish0201]

@hhg7

No issues, please take your time.