diff --git a/Hadoop-BAM b/Hadoop-BAM index 2ff6312..68cce05 160000 --- a/Hadoop-BAM +++ b/Hadoop-BAM @@ -1 +1 @@ -Subproject commit 2ff63122331dd874dacc5e364cc761a87d13be73 +Subproject commit 68cce050c000aecfd9c912e5f29e8b42b1a02978 diff --git a/adam-core b/adam-core index ca3cf2c..baab1f2 160000 --- a/adam-core +++ b/adam-core @@ -1 +1 @@ -Subproject commit ca3cf2c56e60af07eec3f99822e271713ee45db0 +Subproject commit baab1f2bea2bcab83a2fb9878466f2d910d00b25 diff --git a/args4s b/args4s index 6330cd2..a8e22df 160000 --- a/args4s +++ b/args4s @@ -1 +1 @@ -Subproject commit 6330cd262ca9e1f2bf8d85fb1127f81e0afb448f +Subproject commit a8e22dff65cec3c1cba108d636413bad8540b0b4 diff --git a/cli b/cli index 7f46015..350dc1f 160000 --- a/cli +++ b/cli @@ -1 +1 @@ -Subproject commit 7f4601564af900d24c64db6297004e873275a0e6 +Subproject commit 350dc1f0872e6c89927854e61f95f11e1c31fc4b diff --git a/coverage-depth b/coverage-depth index 6d004f1..69c0263 160000 --- a/coverage-depth +++ b/coverage-depth @@ -1 +1 @@ -Subproject commit 6d004f1de384a87513b97642fde558644c454933 +Subproject commit 69c0263c35c2d2a84afc31dfc2e1e296e647edfd diff --git a/guacamole b/guacamole index ff45e96..3b25ce1 160000 --- a/guacamole +++ b/guacamole @@ -1 +1 @@ -Subproject commit ff45e96339c2908bf7d716af29485f3a6ac537b1 +Subproject commit 3b25ce133b922c9b945ffeea9f1f5f844e91be2a diff --git a/io b/io index 9a1342c..6b712a1 160000 --- a/io +++ b/io @@ -1 +1 @@ -Subproject commit 9a1342c0174800a896e54438d5535f2f2f6ea77e +Subproject commit 6b712a1956c1a770e16075e9bbd2429131abd18d diff --git a/iterator b/iterator index 14e60a2..727c937 160000 --- a/iterator +++ b/iterator @@ -1 +1 @@ -Subproject commit 14e60a2782e2333daf1639869f1239d07548850f +Subproject commit 727c93722ff6b617719610eaedf1396891c0db71 diff --git a/loci b/loci index 2504693..bb9dde3 160000 --- a/loci +++ b/loci @@ -1 +1 @@ -Subproject commit 2504693b3ee2271bb235e2bf59744b3569fe6325 +Subproject commit bb9dde3b8dd3dbc34a79968eabe29384fc9cc228 diff --git a/magic-rdds b/magic-rdds index f227c51..74d92cf 160000 --- a/magic-rdds +++ b/magic-rdds @@ -1 +1 @@ -Subproject commit f227c519b1c2c695682ea22f8654320811a2a6d4 +Subproject commit 74d92cfa72758deab7230b3c8cd002af1d33e4eb diff --git a/math b/math index dc13236..6160ab0 160000 --- a/math +++ b/math @@ -1 +1 @@ -Subproject commit dc13236806bb8ddc5da96af94fc41aea6f4fd41b +Subproject commit 6160ab09d2467943617736b96bcc652315f74002 diff --git a/path-utils b/path-utils index eb4982d..f8e8465 160000 --- a/path-utils +++ b/path-utils @@ -1 +1 @@ -Subproject commit eb4982d12ee0cd2d25a310bef3970938c5471bbb +Subproject commit f8e84655e123ba653c3fdc4813f13c27600dab31 diff --git a/project/build.properties b/project/build.properties deleted file mode 100644 index 394cb75..0000000 --- a/project/build.properties +++ /dev/null @@ -1 +0,0 @@ -sbt.version=1.0.4 diff --git a/project/plugins.sbt b/project/plugins.sbt deleted file mode 100644 index dbb345f..0000000 --- a/project/plugins.sbt +++ /dev/null @@ -1 +0,0 @@ -addSbtPlugin("org.hammerlab" % "sbt-parent" % "4.0.0-SNAPSHOT") diff --git a/reads b/reads index c2ce422..29ddb90 160000 --- a/reads +++ b/reads @@ -1 +1 @@ -Subproject commit c2ce422ae02704f662cc9d517dc18feb0da6bc93 +Subproject commit 29ddb903ade499504904038cccf342eaf75e9db0 diff --git a/readsets b/readsets index b38bb6f..210ba06 160000 --- a/readsets +++ b/readsets @@ -1 +1 @@ -Subproject commit b38bb6feb94fcbe10034a71dd529e82a62a81420 +Subproject commit 210ba06f04f33a6cb909f52e05a76435009f864c diff --git a/reference b/reference index 438403e..8533e70 160000 --- a/reference +++ b/reference @@ -1 +1 @@ -Subproject commit 438403ea4eca262db837c82301a2751d027c9cbb +Subproject commit 8533e702924a0fecc492b44741d9234c8f3e835c diff --git a/sbt-parent b/sbt-parent index bad4979..46a16cf 160000 --- a/sbt-parent +++ b/sbt-parent @@ -1 +1 @@ -Subproject commit bad49798404f53107963df702621fb538b8119ce +Subproject commit 46a16cf3549ce8c92ed6ee053c2cfd2d407a839a diff --git a/shapeless b/shapeless index 502aed3..c6d4b1f 160000 --- a/shapeless +++ b/shapeless @@ -1 +1 @@ -Subproject commit 502aed3121b3c84b0301ac2dc025ea465a91d33d +Subproject commit c6d4b1f9b6544eb9aeba93c783b602e6a1f622fe diff --git a/spark-bam b/spark-bam index ef5ebeb..cdbd459 160000 --- a/spark-bam +++ b/spark-bam @@ -1 +1 @@ -Subproject commit ef5ebeb088df4eaee977344f32fccc2fc60b8d38 +Subproject commit cdbd459be06a01bad272557fb46d77cb3267fd89 diff --git a/spark-tests b/spark-tests index 543fe7f..de78fc0 160000 --- a/spark-tests +++ b/spark-tests @@ -1 +1 @@ -Subproject commit 543fe7f72a0b8b6bd095670d16297800e50b1040 +Subproject commit de78fc0675cff8c34cc4f725cf840df0bdd1d74e diff --git a/spark-util b/spark-util index d9926a9..f29768a 160000 --- a/spark-util +++ b/spark-util @@ -1 +1 @@ -Subproject commit d9926a93535907c25a0fb864eb4f5d91c4d0fe66 +Subproject commit f29768a3429568fc50fc68136d84b74d42ccbb12 diff --git a/string-utils b/string-utils index c455244..c061a04 160000 --- a/string-utils +++ b/string-utils @@ -1 +1 @@ -Subproject commit c4552443f41df137adb3ab6ceb607bd42001b5b4 +Subproject commit c061a04a32c8c121681a6800ece0f3b6c8c0a9a6 diff --git a/test-utils b/test-utils index 8fc5e45..adb2abc 160000 --- a/test-utils +++ b/test-utils @@ -1 +1 @@ -Subproject commit 8fc5e4592e0c792ef832f258103d1c263452b4be +Subproject commit adb2abcd694e26094016d5ebeaa9ca412c05544a diff --git a/utils b/utils index 5c797d6..8b7f151 160000 --- a/utils +++ b/utils @@ -1 +1 @@ -Subproject commit 5c797d6e37affa4fe986efc34e32afcde31bcca1 +Subproject commit 8b7f1512794a02323167d2f66577fbb378c38173 diff --git a/utils-cli b/utils-cli index 6d9323f..bc10d85 160000 --- a/utils-cli +++ b/utils-cli @@ -1 +1 @@ -Subproject commit 6d9323f3ec0eed398e55dff210f40ebdfc41c58c +Subproject commit bc10d850d7ab2f5c4716cdb4f84f406bf845e679