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.gitmodules
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[submodule "code/functions/tools/UltiSig"]
path = code/functions/tools/UltiSig
url = https://github.com/ypradat/UltiSig
[submodule "code/functions/tools/comut"]
path = code/functions/tools/comut
url = https://github.com/ypradat/comut
[submodule "code/functions/tools/forester"]
path = code/functions/tools/forester
url = https://github.com/ypradat/forester
[submodule "code/functions/tools/tableExtra"]
path = code/functions/tools/tableExtra
url = https://github.com/ypradat/tableExtra
[submodule "code/functions/tools/PrettyPy"]
path = code/functions/tools/PrettyPy
url = https://github.com/ypradat/PrettyPy
[submodule "code/pipelines/rnafusion"]
path = code/pipelines/rnafusion
url = https://github.com/nf-core/rnafusion
[submodule "code/scripts/fusions_analysis/external/FusionAnnotator"]
path = code/scripts/fusions_analysis/external/FusionAnnotator
url = https://github.com/FusionAnnotator/FusionAnnotator
[submodule "code/scripts/fusions_analysis/external/oncokb-annotator"]
path = code/scripts/fusions_analysis/external/oncokb-annotator
url = https://github.com/oncokb/oncokb-annotator
[submodule "code/scripts/immuno_analysis/external/MFP"]
path = code/scripts/immuno_analysis/external/MFP
url = https://github.com/BostonGene/MFP
[submodule "code/scripts/mutational_signatures/external/sigprofilerjulia"]
path = code/scripts/mutational_signatures/external/sigprofilerjulia
url = https://github.com/ypradat/sigprofilerjulia.git