bamintervalcomment/bamflagsplit

This release adds the programs bamintervalcomment for marking reads overlapping named intervals (e.g. genes) and bamflagsplit for splitting BAM files using various flags (like properly aligned pairs, improperly aligned pairs, pairs split over different reference sequences).

biobambam version 0.0.138

This is a bug fix release for version 0.0.137 which had a flaw in the fastqtobam program leading to duplicated pairs.