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1. urWGS urWGS Public

   Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5

   Shell 18 2

2. SegAlign SegAlign Public

   A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

   C++ 66 16

3. Darwin-WGA Darwin-WGA Public

   Co-processor for whole genome alignment

   Verilog 12 6

4. ComparativeGenomicsToolkit/cactus ComparativeGenomicsToolkit/cactus Public

   Official home of genome aligner based upon notion of Cactus graphs

   C 521 111

5. NVIDIA-Genomics-Research/GenomeWorks NVIDIA-Genomics-Research/GenomeWorks Public

   SDK for GPU accelerated genome assembly and analysis

   Cuda 285 76