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Look into ape nexus parser/converter

Priority: Medium

Status: On Hold

Type: Enhancement

Status: Open.

#165 In grunwaldlab/metacoder;

· zachary-foster opened on Aug 1, 2017

Add parser for ITIS taxonomy database

Priority: Low

Status: On Hold

Type: Maintenance

Status: Open.

#164 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for GenBank taxonomy database

Status: Open.

#163 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for UNITE USEARCH release

Status: Open.

#159 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for UNITE+INSDC full release

Status: Open.

#158 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for UNITE CREST release

Status: Open.

#157 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for UNITE Mothur FASTA release

Status: Open.

#156 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Add parser for UNITE QIIME release

Status: Open.

#155 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

How to handle phyloseq objects with no tax table?

Status: Open.

#152 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 31, 2017

Move example data sets to a separate package

Status: Open.

#151 In grunwaldlab/metacoder;

· zachary-foster opened on Jul 24, 2017

Add parser for nested strucutres

Status: Open.

#130 In grunwaldlab/metacoder;

· zachary-foster opened on Aug 29, 2016

Make standard stacked barcharts

Status: Open.

#105 In grunwaldlab/metacoder;

· zachary-foster opened on May 26, 2016

Make planel of diverse data to test plotting defualts

heat tree rewrite

someday

Status: Open.

#97 In grunwaldlab/metacoder;

· zachary-foster opened on May 13, 2016

<code>plot_taxonomy</code>: revamp invalid layout warnings

heat tree rewrite

Status: Open.

#93 In grunwaldlab/metacoder;

· zachary-foster opened on May 11, 2016

Add links to vignette websites in function help pages

Status: Open.

#89 In grunwaldlab/metacoder;

· zachary-foster opened on May 9, 2016

Make code formatting consistent

Status: Open.

#85 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 25, 2016

Check how to install EMBOSS on Mac and Windows

Status: Open.

#84 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 15, 2016

Look into incorperating Primer Prospector

Status: Open.

#81 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 13, 2016

<code>plot_taxonomy</code>: when an integer is given dont put decimals on legend

heat tree rewrite

Status: Open.

#77 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 8, 2016

<code>primersearch</code>: investigate multiple primer pairs at once

Status: Open.

#73 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 7, 2016

<code>plot_taxonomy</code>: add option to control plot quality

heat tree rewrite

Status: Open.

#70 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 5, 2016

Add function to read fasta subset

Status: Open.

#69 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 4, 2016

<code>plot_taxonomy</code>: add legends for categorical data

heat tree rewrite

Status: Open.

#68 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 3, 2016

<code>plot_taxonomy</code>: see if there is a better way to format scale numbers

heat tree rewrite

Status: Open.

#67 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 3, 2016

<code>plot_taxonomy</code>: use force-directed graph layouts correctly

heat tree rewrite

Status: Open.

#35 In grunwaldlab/metacoder;

· zachary-foster opened on Apr 27, 2015