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1. Varying_kmer_effect_in_denovo_assembly Varying_kmer_effect_in_denovo_assembly Public

   This project plots the effect of selecting different kmer length parameter in 2 different de novo genome assembly tools - AbySS and Velvet.

   Python

2. RNAseq-Workflow-Mapping-Assembly-and-Differential-Gene-Expression-Analysis RNAseq-Workflow-Mapping-Assembly-and-Differential-Gene-Expression-Analysis Public

   This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 condi…

   Shell 1

3. Tcell_Toggle_Tetrahedron Tcell_Toggle_Tetrahedron Public

   A tool for processing and analyzing RNA-Seq data. This tool downloads and converts the raw count values to TPM-normalized matrices and performs Gene Set Enrichment Analysis (GSEA) to output various…

   Python

4. EMT_score_python_implementation EMT_score_python_implementation Public

   Python Implementation of EMT_Score work. This project takes a GSE ID as input and downloads the GSE dataset and its annotation data.

   Python

5. sequence_gradient_graph sequence_gradient_graph Public

   A python Flask Web app. The website takes multiple DNA Sequences and some parameters as input. It then aligns the sequences by MUSCLE API (multiple sequence alignment tool). It then processes the d…

   CSS