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Patch splicing visualization to account for no longer using Cufflinks
updated coordinates to GRCh38
Update DE modes and Alternative Expression to use HISAT2 BAMs and simplified paths.
update
Updated Transcript Assembly Visualization (markdown)
fix example urls to use new dns service
update example urls to account for change in apache server root
updated urls from dyndns.org to entrydns.org
update cshl AWS URLs from cbw to cshl