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Saving Your Results
If you are performing this tutorial on a cloud instance, everything will be deleted when the instance is destroyed! To package and download everything used or created during the tutorials you can do the following from your cloud terminal session.
First package and compress all of the directories and files in the ‘rnaseq’ directory
cd /home/ubuntu/workspace/
tar -czvf rnaseq_tutorial.tar.gz rnaseq/
Now you can download this to your own computer from here:
- http://YOUR_IP_ADDRESS/rnaseq_tutorial.tar.gz
To unpack this archive at a terminal session on your own Linux or Mac computer you can do the following:
tar -xzvf rnaseq_tutorial.tar.gz
| Previous Section | This Section | Next Section | |:------------------------------------------------------------:|:---------------------------:|:------------------------------:| | Trinotate | Saving Results | Abbreviations |
NOTICE: This resource has been moved to rnabio.org. The version here will be maintained for legacy use only. All future development and maintenance will occur only at rnabio.org. Please proceed to rnabio.org for the current version of this course.
Table of Contents
Module 0: Authors | Citation | Syntax | Intro to AWS | Log into AWS | Unix | Environment | Resources
Module 1: Installation | Reference Genomes | Annotations | Indexing | Data | Data QC
Module 2: Adapter Trim | Alignment | IGV | Alignment Visualization | Alignment QC
Module 3: Expression | Differential Expression | DE Visualization
Module 4: Alignment Free - Kallisto
Module 5: Ref Guided | De novo | Merging | Differential Splicing | Splicing Visualization
Module 6: Trinity
Module 7: Trinotate
Appendix: Saving Results | Abbreviations | Lectures | Practical Exercise Solutions | Integrated Assignment | Proposed Improvements | AWS Setup