Merge pull request #33 from gjbex/bugfix/alog_submission_directory

gjbex · web-flow · commit 36f673275c49 · 2022-08-23T10:59:40.000+02:00
Fix missing enivonrment variable name definition
diff --git a/conf/atools.conf b/conf/atools.conf
@@ -13,21 +13,25 @@ shell = bash
 array_idx_var = PBS_ARRAYID
 job_id_var = PBS_JOBID
 job_name_var = PBS_JOBNAME
+submission_dir = PBS_O_WORKDIR
 
 [moab]
 array_idx_var = MOAB_JOBARRAYINDEX
 job_id_var = MOAB_JOBID
 job_name_var = MOAB_JOBNAME
+submission_dir = MOAB_SUBMITDIR
 
 [sge]
 array_idx_var = SGE_TASK_ID
 job_id_var = JOB_ID
 job_name_var = JOB_NAME
+submission_dir = SGE_O_WORKDIR
 
 [slurm]
 array_idx_var = SLURM_ARRAY_TASK_ID
 job_id_var = SLURM_ARRAY_JOB_ID
 job_name_var = SLURM_JOB_NAME
+submission_dir = SLURM_SUBMIT_DIR
 
 # file formats for reduction
 [text]
diff --git a/conf/atools.conf.m4 b/conf/atools.conf.m4
@@ -13,21 +13,25 @@ shell = SHELL
 array_idx_var = PBS_ARRAYID
 job_id_var = PBS_JOBID
 job_name_var = PBS_JOBNAME
+submission_dir = PBS_O_WORKDIR
 
 [moab]
 array_idx_var = MOAB_JOBARRAYINDEX
 job_id_var = MOAB_JOBID
 job_name_var = MOAB_JOBNAME
+submission_dir = MOAB_SUBMITDIR
 
 [sge]
 array_idx_var = SGE_TASK_ID
 job_id_var = JOB_ID
 job_name_var = JOB_NAME
+submission_dir = SGE_O_WORKDIR
 
 [slurm]
 array_idx_var = SLURM_ARRAY_TASK_ID
 job_id_var = SLURM_ARRAY_JOB_ID
 job_name_var = SLURM_JOB_NAME
+submission_dir = SLURM_SUBMIT_DIR
 
 # file formats for reduction
 [text]
diff --git a/configure.ac b/configure.ac
@@ -1,4 +1,4 @@
-AC_INIT([atools], [1.5.0], [geertjan.bex@uhasselt.be])
+AC_INIT([atools], [1.5.1], [geertjan.bex@uhasselt.be])
 AM_INIT_AUTOMAKE([-Wall -Werror foreign tar-pax])
 
 AC_CONFIG_FILES([

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-AC_INIT([atools], [1.5.0], [geertjan.bex@uhasselt.be])`
	`1`	`+AC_INIT([atools], [1.5.1], [geertjan.bex@uhasselt.be])`
`2`	`2`	`AM_INIT_AUTOMAKE([-Wall -Werror foreign tar-pax])`
`3`	`3`
`4`	`4`	`AC_CONFIG_FILES([`