diff --git a/lib/analyze.js b/lib/analyze.js
index 07dfa4963c..718c5a2c39 100644
--- a/lib/analyze.js
+++ b/lib/analyze.js
@@ -165,21 +165,25 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
                     !hasPackWithCustomQueries) {
                     throw new Error(`Unable to analyze ${language} as no queries were selected for this language`);
                 }
+                const customQueryIndices = [];
+                for (let i = 0; i < queries.custom.length; ++i) {
+                    if (queries.custom[i].queries.length > 0) {
+                        customQueryIndices.push(i);
+                    }
+                }
                 logger.startGroup(`Running queries for ${language}`);
                 const querySuitePaths = [];
-                if (queries["builtin"].length > 0) {
+                if (queries.builtin.length > 0) {
                     const startTimeBuiltIn = new Date().getTime();
-                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries["builtin"], queryFilters), undefined)));
+                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries.builtin, queryFilters), undefined)));
                     statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
                         new Date().getTime() - startTimeBuiltIn;
                 }
                 const startTimeCustom = new Date().getTime();
                 let ranCustom = false;
-                for (let i = 0; i < queries["custom"].length; ++i) {
-                    if (queries["custom"][i].queries.length > 0) {
-                        querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries["custom"][i].queries, queryFilters), queries["custom"][i].searchPath)));
-                        ranCustom = true;
-                    }
+                for (const i of customQueryIndices) {
+                    querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries.custom[i].queries, queryFilters), queries.custom[i].searchPath)));
+                    ranCustom = true;
                 }
                 if (packsWithVersion.length > 0) {
                     querySuitePaths.push(await runQueryPacks(language, "packs", packsWithVersion, queryFilters));
diff --git a/lib/analyze.js.map b/lib/analyze.js.map
index d65dad3690..195666a316 100644
--- a/lib/analyze.js.map
+++ b/lib/analyze.js.map
@@ -1 +1 @@
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\ No newline at end of file
diff --git a/src/analyze.ts b/src/analyze.ts
index 72deaf6e13..1a5fd2807d 100644
--- a/src/analyze.ts
+++ b/src/analyze.ts
@@ -268,15 +268,22 @@ export async function runQueries(
           );
         }
 
+        const customQueryIndices: number[] = [];
+        for (let i = 0; i < queries.custom.length; ++i) {
+          if (queries.custom[i].queries.length > 0) {
+            customQueryIndices.push(i);
+          }
+        }
+
         logger.startGroup(`Running queries for ${language}`);
         const querySuitePaths: string[] = [];
-        if (queries["builtin"].length > 0) {
+        if (queries.builtin.length > 0) {
           const startTimeBuiltIn = new Date().getTime();
           querySuitePaths.push(
             (await runQueryGroup(
               language,
               "builtin",
-              createQuerySuiteContents(queries["builtin"], queryFilters),
+              createQuerySuiteContents(queries.builtin, queryFilters),
               undefined
             )) as string
           );
@@ -285,21 +292,16 @@ export async function runQueries(
         }
         const startTimeCustom = new Date().getTime();
         let ranCustom = false;
-        for (let i = 0; i < queries["custom"].length; ++i) {
-          if (queries["custom"][i].queries.length > 0) {
-            querySuitePaths.push(
-              (await runQueryGroup(
-                language,
-                `custom-${i}`,
-                createQuerySuiteContents(
-                  queries["custom"][i].queries,
-                  queryFilters
-                ),
-                queries["custom"][i].searchPath
-              )) as string
-            );
-            ranCustom = true;
-          }
+        for (const i of customQueryIndices) {
+          querySuitePaths.push(
+            (await runQueryGroup(
+              language,
+              `custom-${i}`,
+              createQuerySuiteContents(queries.custom[i].queries, queryFilters),
+              queries.custom[i].searchPath
+            )) as string
+          );
+          ranCustom = true;
         }
         if (packsWithVersion.length > 0) {
           querySuitePaths.push(