DESCRIPTION

Package: idr2d
Title: Irreproducible Discovery Rate for Genomic Interactions
    Data
Version: 1.17.0
Authors@R: 
    c(person(given = "Konstantin",
             family = "Krismer",
             role = c("aut", "cre", "cph"),
             email = "krismer@mit.edu",
             comment = c(ORCID = "0000-0001-8994-3416")),
      person(given = "David",
             family = "Gifford",
             role = c("ths", "cph"),
             email = "gifford@mit.edu",
             comment = c(ORCID = "0000-0003-1709-4034")))
Description: A tool to measure reproducibility between genomic experiments
    that produce two-dimensional peaks (interactions between peaks), such
    as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original
    idr package, which is intended for (one-dimensional) ChIP-seq peaks.
License: MIT + file LICENSE
URL: https://idr2d.mit.edu
Depends:
    R (>= 3.6)
Imports:
    dplyr (>= 0.7.6),
    futile.logger (>= 1.4.3),
    GenomeInfoDb (>= 1.14.0),
    GenomicRanges (>= 1.30),
    ggplot2 (>= 3.1.1),
    grDevices,
    grid,
    idr (>= 1.2),
    IRanges (>= 2.18.0),
    magrittr (>= 1.5),
    methods,
    reticulate (>= 1.13),
    scales (>= 1.0.0),
    stats,
    stringr (>= 1.3.1),
    utils
Suggests:
    DT (>= 0.4),
    htmltools (>= 0.3.6),
    knitr (>= 1.20),
    rmarkdown (>= 1.10),
    roxygen2 (>= 6.1.0),
    testthat (>= 2.1.0)
VignetteBuilder: 
    knitr
biocViews: DNA3DStructure, GeneRegulation, PeakDetection, Epigenetics,
    FunctionalGenomics, Classification, HiC
Encoding: UTF-8
RoxygenNote: 7.1.0
SystemRequirements: Python (>= 3.5.0), hic-straw