ci: test non-exe before installed and running Gemini3D

Author: scivision

.github/workflows/ci.yml

@@ -20,6 +20,7 @@ on:
     - "!scripts/**"
     - "!example/**"
     - "!Examples/**"
+  workflow_dispatch:
 
 
 jobs:
@@ -73,14 +74,19 @@ jobs:
     - name: Git Checkout ${{ github.action_repository }}
       uses: actions/checkout@v4
 
+    - uses: ./.github/workflows/composite-python
+      timeout-minutes: 15
+
     - uses: ./.github/workflows/composite-pkg
       timeout-minutes: 15
 
     - uses: ./.github/workflows/composite-gemini3d
       timeout-minutes: 15
 
-    - uses: ./.github/workflows/composite-python
-      timeout-minutes: 15
+    - name: Executable tests
+      run: pytest ${{ github.workspace }} -m "exe"
+      env:
+        GEMCI_ROOT: ${{ github.workspace }}/gemci
 
 # codecov coverage
     # - run: pip install codecov pytest-cov

.github/workflows/composite-python/action.yml

@@ -12,8 +12,8 @@ runs:
     run: python -m pip install .[tests,plots]
     shell: bash
 
-  - name: Unit and Integration Tests
-    run: pytest ${{ github.workspace }}
+  - name: Non-executable tests
+    run: pytest ${{ github.workspace }} -m "not exe"
     shell: bash
     env:
       GEMCI_ROOT: ${{ github.workspace }}/gemci

pyproject.toml

@@ -57,3 +57,4 @@ log_cli = true
 log_cli_level = "WARNING"
 log_cli_format = "%(levelname)s"
 addopts = "--ignore=archive/"
+markers = ["exe: needs external executable to subprocess.run()"]

src/gemini3d/tests/intg/test_dryrun.py

@@ -24,13 +24,15 @@ def test_memory(name, bref):
     assert est == approx(bref, abs=0, rel=0)
 
 
+@pytest.mark.exe
 def test_mpiexec():
     exe = find.gemini_exe()
 
     mpiexec = job.check_mpiexec("mpiexec", exe)
     assert isinstance(mpiexec, str)
 
 
+@pytest.mark.exe
 @pytest.mark.parametrize("name", ["mini2dew_eq"])
 def test_dryrun(name, tmp_path):
     ref = gemini3d.web.download_and_extract(name, ir.files(__package__) / "data")

src/gemini3d/tests/intg/test_magcalc.py

@@ -9,6 +9,7 @@
 import gemini3d.magcalc as gm
 
 
+@pytest.mark.exe
 @pytest.mark.parametrize("name", ["mini2dew_fang", "mini2dns_fang", "mini3d_fang"])
 def test_dryrun(name, tmp_path, monkeypatch):
     if not os.environ.get("GEMINI_CIROOT"):

src/gemini3d/tests/intg/test_model.py

@@ -21,6 +21,7 @@
 import gemini3d.msis
 
 
+@pytest.mark.exe
 @pytest.mark.parametrize(
     "name",
     [

src/gemini3d/tests/intg/test_msis.py

@@ -11,11 +11,13 @@
 import gemini3d.find as find
 
 
+@pytest.mark.exe
 def test_find_msis():
     msis_exe = find.executable("msis_setup")
     print(msis_exe)
 
 
+@pytest.mark.exe
 @pytest.mark.parametrize("version", [0, 21])
 def test_msis(version, tmp_path):
     if version == 21: