This is the runs directory holding all input files needed to run the cases for the different countries.

NB: TO RERUN THESE CASES, CHECKOUT AND COMPILE THE SEIR MODEL FROM THE BRANCH paper_version


Each country has a separate directory with Case* subdirectories for the different cases.

Each Case* directory includes the required *.in files to run a case. As a minimum this should include e.g.,
   corona.in          # Mandatory file
   infile.in          # Mandatory file
   agegroups.in       # Optional file (defaults to Norwegian data)
   pfactors.in        # Optional file (defaults to Norwegian data which may be valid generally)
   Rmatrix_01.in      # Optional file defaults to one
   Rmatrix_02.in      # Optional file defaults to one
   Rmatrix_03.in      # Optional file defaults to one
   seed.dat           # Optional file generated when seir is run and stores random seed.

The script run.sh can be used to run all cases for all countries, and make the standard tecplot plots.
It is simple to change tecplot to  python3 ../python/enkf_seir/plot/plot.py + options


/home/geve/Dropbox/EnKF_seir/runs
`-----Argentina 
 |     `-----Case01 
 |     `-----Case02 
 |     `-----Case03 
 |     `-----Case04 
 |     `-----Case05 
`-----Brazil 
 |     `-----Case01 
 |     `-----Case02 
 |     `-----Case03 
`-----France 
 |     `-----Case01 
 |     `-----Case02 
 |     `-----Case03 
 |     `-----Case04 
 |     `-----Case05 
 |     `-----Case06 
`-----Netherlands 
 |     `-----Case_2.2_0.8_0.9 
 |     `-----Case_2.2_const 
 |     `-----Case_3.2_0.8_0.9 
 |     `-----Case_3.2_0.8_1.0 
 |     `-----CaseGE 
`-----Norway 
 |     `-----Case01 
 |     `-----Case02 
`-----Quebec 
 |     `-----Case01 
 |     `-----Case02 
 |     `-----Case03 
`-----UK 
 |     `-----Case01 
 |     `-----Case02 
`-----US 
 |     `-----Case01