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Update Fastq interlacer/de-interlacer + paired_end_joiner to fix bug with compressed inputs #67

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jennaj opened this issue Dec 11, 2017 · 3 comments
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Update Fastq interlacer/de-interlacer + paired_end_joiner to fix bug with compressed inputs #67

jennaj opened this issue Dec 11, 2017 · 3 comments
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bug install usegalaxy.org tool install usegalaxy.org requested test/retest-pass passed retest

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@jennaj
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jennaj commented Dec 11, 2017 •
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https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_interlacer/ef49268ee579
https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_deinterlacer/b7ce72b00e62
https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_joiner/822cc1e6274e

Once applied, should fix this error with compressed inputs (still errors 12/11/17): galaxyproject/tools-devteam#487
@jennaj jennaj added the help wanted issue pending assignee or working group label Dec 11, 2017
@jennaj jennaj changed the title Update Fastq interlacer/de-interlacer to fix bug with compressed inputs Update Fastq interlacer/de-interlacer + paired_end_joiner to fix bug with compressed inputs Dec 11, 2017
@jennaj jennaj mentioned this issue Mar 21, 2018
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@martenson
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updated on Main in 34a4dd4

@jennaj
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jennaj commented May 16, 2018

Retesting (again, problems first time around)

@jennaj jennaj added bug install usegalaxy.org tool install usegalaxy.org requested test/retest-do active tests and removed help wanted issue pending assignee or working group labels May 16, 2018
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jennaj commented May 17, 2018 •
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Test history: https://usegalaxy.org/u/jen/h/test-fastq-interlacer-de-interlacer

fastqsanger

  • de-interlacer 1.1.2, datasets 52-55: pass
  • interlacer 1.2.0.1, datasets 64-65: pass

fastqsanger.gz

  • de-interlacer 1.1.2, datasets 56-59: pass
  • interlacer 1.2.0.1, datasets 66-67: pass

fastqsanger.bz2

  • de-interlacer 1.1.2, datasets 60-63: pass
  • interlacer 1.2.0.1, datasets 68-69: pass

@jennaj jennaj closed this as completed May 17, 2018
@jennaj jennaj added test/retest-pass passed retest and removed test/retest-do active tests labels May 17, 2018
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