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History to demonstrate issues on some tutorial data, including successful run without genome guided mode and with rnaSPADES using untrusted contigs option: https://usegalaxy.eu/u/hymenium/h/trinity-tests
Changes to trinity.xml seem rather minor, nesting the read data code within the genome guided check. I don't have access to a workstation to run galaxy locally for debugging, but I have suggested some changes in this branch and the tests should still be operational, tools/trinity/trinity.xml
Fixing this bug would also satisfy this request to remove the requirement for read files in genome guided mode: #3046
The text was updated successfully, but these errors were encountered:
Trinity exits immediately if the read files are passed alongside the aligned reads bam file in genome guided mode.
Changes to trinity.xml seem rather minor, nesting the read data code within the genome guided check. I don't have access to a workstation to run galaxy locally for debugging, but I have suggested some changes in this branch and the tests should still be operational, tools/trinity/trinity.xml
Fixing this bug would also satisfy this request to remove the requirement for read files in genome guided mode:
#3046
The text was updated successfully, but these errors were encountered: