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Copy pathsamples_crema.txt
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samples_crema.txt
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A_AD A_AD_rep1 ../../reads/crema_ref/CR_A_01_AD_filtered.1.gz ../../reads/crema_ref/CR_A_01_AD_filtered.2.gz
A_AD A_AD_rep2 ../../reads/crema_ref/CR_A_02_AD_filtered.1.gz ../../reads/crema_ref/CR_A_02_AD_filtered.2.gz
A_AD A_AD_rep3 ../../reads/crema_ref/CR_A_03_AD_filtered.1.gz ../../reads/crema_ref/CR_A_03_AD_filtered.2.gz
A_AD A_AD_rep4 ../../reads/crema_ref/CR_A_05_AD_filtered.1.gz ../../reads/crema_ref/CR_A_05_AD_filtered.2.gz
A_AD A_AD_rep5 ../../reads/crema_ref/CR_A_06_AD_filtered.1.gz ../../reads/crema_ref/CR_A_06_AD_filtered.2.gz
A_CT A_CT_rep1 ../../reads/crema_ref/CR_A_01_CT_filtered.1.gz ../../reads/crema_ref/CR_A_01_CT_filtered.2.gz
A_CT A_CT_rep2 ../../reads/crema_ref/CR_A_02_CT_filtered.1.gz ../../reads/crema_ref/CR_A_02_CT_filtered.2.gz
A_CT A_CT_rep3 ../../reads/crema_ref/CR_A_03_CT_filtered.1.gz ../../reads/crema_ref/CR_A_03_CT_filtered.2.gz
A_CT A_CT_rep4 ../../reads/crema_ref/CR_A_05_CT_filtered.1.gz ../../reads/crema_ref/CR_A_05_CT_filtered.2.gz
A_CT A_CT_rep5 ../../reads/crema_ref/CR_A_06_CT_filtered.1.gz ../../reads/crema_ref/CR_A_06_CT_filtered.2.gz
B_AD B_AD_rep1 ../../reads/crema_ref/CR_B_01_AD_filtered.1.gz ../../reads/crema_ref/CR_B_01_AD_filtered.2.gz
B_AD B_AD_rep2 ../../reads/crema_ref/CR_B_02_AD_filtered.1.gz ../../reads/crema_ref/CR_B_02_AD_filtered.2.gz
B_AD B_AD_rep3 ../../reads/crema_ref/CR_B_03_AD_filtered.1.gz ../../reads/crema_ref/CR_B_03_AD_filtered.2.gz
B_AD B_AD_rep4 ../../reads/crema_ref/CR_B_04_AD_filtered.1.gz ../../reads/crema_ref/CR_B_04_AD_filtered.2.gz
B_AD B_AD_rep5 ../../reads/crema_ref/CR_B_05_AD_filtered.1.gz ../../reads/crema_ref/CR_B_05_AD_filtered.2.gz
B_CT B_CT_rep1 ../../reads/crema_ref/CR_B_01_CT_filtered.1.gz ../../reads/crema_ref/CR_B_01_CT_filtered.2.gz
B_CT B_CT_rep2 ../../reads/crema_ref/CR_B_02_CT_filtered.1.gz ../../reads/crema_ref/CR_B_02_CT_filtered.2.gz
B_CT B_CT_rep3 ../../reads/crema_ref/CR_B_03_CT_filtered.1.gz ../../reads/crema_ref/CR_B_03_CT_filtered.2.gz
B_CT B_CT_rep4 ../../reads/crema_ref/CR_B_04_CT_filtered.1.gz ../../reads/crema_ref/CR_B_04_CT_filtered.2.gz
B_CT B_CT_rep5 ../../reads/crema_ref/CR_B_05_CT_filtered.1.gz ../../reads/crema_ref/CR_B_05_CT_filtered.2.gz
C_AD C_AD_rep1 ../../reads/crema_ref/CR_C_02_AD_filtered.1.gz ../../reads/crema_ref/CR_C_02_AD_filtered.2.gz
C_AD C_AD_rep2 ../../reads/crema_ref/CR_C_03_AD_filtered.1.gz ../../reads/crema_ref/CR_C_03_AD_filtered.2.gz
C_AD C_AD_rep3 ../../reads/crema_ref/CR_C_06_AD_filtered.1.gz ../../reads/crema_ref/CR_C_06_AD_filtered.2.gz
C_AD C_AD_rep4 ../../reads/crema_ref/CR_C_07_AD_filtered.1.gz ../../reads/crema_ref/CR_C_07_AD_filtered.2.gz
C_AD C_AD_rep5 ../../reads/crema_ref/CR_C_08_AD_filtered.1.gz ../../reads/crema_ref/CR_C_08_AD_filtered.2.gz
C_CT C_CT_rep1 ../../reads/crema_ref/CR_C_02_CT_filtered.1.gz ../../reads/crema_ref/CR_C_02_CT_filtered.2.gz
C_CT C_CT_rep2 ../../reads/crema_ref/CR_C_03_CT_filtered.1.gz ../../reads/crema_ref/CR_C_03_CT_filtered.2.gz
C_CT C_CT_rep3 ../../reads/crema_ref/CR_C_06_CT_filtered.1.gz ../../reads/crema_ref/CR_C_06_CT_filtered.2.gz
C_CT C_CT_rep4 ../../reads/crema_ref/CR_C_07_CT_filtered.1.gz ../../reads/crema_ref/CR_C_07_CT_filtered.2.gz
C_CT C_CT_rep5 ../../reads/crema_ref/CR_C_08_CT_filtered.1.gz ../../reads/crema_ref/CR_C_08_CT_filtered.2.gz
D_AD D_AD_rep1 ../../reads/crema_ref/CR_D_01_AD_filtered.1.gz ../../reads/crema_ref/CR_D_01_AD_filtered.2.gz
D_AD D_AD_rep2 ../../reads/crema_ref/CR_D_02_AD_filtered.1.gz ../../reads/crema_ref/CR_D_02_AD_filtered.2.gz
D_AD D_AD_rep3 ../../reads/crema_ref/CR_D_03_AD_filtered.1.gz ../../reads/crema_ref/CR_D_03_AD_filtered.2.gz
D_AD D_AD_rep4 ../../reads/crema_ref/CR_D_04_AD_filtered.1.gz ../../reads/crema_ref/CR_D_04_AD_filtered.2.gz
D_AD D_AD_rep5 ../../reads/crema_ref/CR_D_06_AD_filtered.1.gz ../../reads/crema_ref/CR_D_06_AD_filtered.2.gz
D_CT D_CT_rep1 ../../reads/crema_ref/CR_D_01_CT_filtered.1.gz ../../reads/crema_ref/CR_D_01_CT_filtered.2.gz
D_CT D_CT_rep2 ../../reads/crema_ref/CR_D_02_CT_filtered.1.gz ../../reads/crema_ref/CR_D_02_CT_filtered.2.gz
D_CT D_CT_rep3 ../../reads/crema_ref/CR_D_03_CT_filtered.1.gz ../../reads/crema_ref/CR_D_03_CT_filtered.2.gz
D_CT D_CT_rep4 ../../reads/crema_ref/CR_D_04_CT_filtered.1.gz ../../reads/crema_ref/CR_D_04_CT_filtered.2.gz
D_CT D_CT_rep5 ../../reads/crema_ref/CR_D_06_CT_filtered.1.gz ../../reads/crema_ref/CR_D_06_CT_filtered.2.gz