Skip to content
@flatironinstitute

Flatiron Institute

Popular repositories Loading

  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 675 386

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 362 91

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 326 85

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 257 149

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 151 95

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 124 22

Repositories

Showing 10 of 208 repositories
  • c2py Public

    Clair/c2py low level library

    flatironinstitute/c2py’s past year of commit activity
    C++ 1 Apache-2.0 1 0 0 Updated Jul 29, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 362 91 46 (3 issues need help) 9 Updated Jul 29, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 100 MIT 10 127 (3 issues need help) 3 Updated Jul 29, 2025
  • walnuts Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnuts’s past year of commit activity
    C++ 8 MIT 1 7 1 Updated Jul 28, 2025
  • sparse_dot Public

    Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

    flatironinstitute/sparse_dot’s past year of commit activity
    Python 87 MIT 11 3 0 Updated Jul 28, 2025
  • PyBenchFramework Public

    BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

    flatironinstitute/PyBenchFramework’s past year of commit activity
    Python 0 1 0 1 Updated Jul 28, 2025
  • adapol Public

    Adaptive Pole Fitting for Quantum Many-Body Physics

    flatironinstitute/adapol’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 3 0 0 Updated Jul 27, 2025
  • vintch-v1-model Public

    Implementation of V1 model from Vintch et al., 2015

    flatironinstitute/vintch-v1-model’s past year of commit activity
    0 MIT 0 0 1 Updated Jul 27, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 675 GPL-2.0 386 71 (1 issue needs help) 11 Updated Jul 25, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 47 MIT 4 1 4 Updated Jul 25, 2025
View all repositories