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<html><head><meta content="chrome=1" http-equiv="X-UA-Compatible" /><meta charset="utf-8" /><meta content="width=device-width, initial-scale=1, user-scalable=no" name="viewport" /><title>clortex neurons</title><style>body {
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</style></head><body><header><div class="heading"><h1>clortex neurons</h1><h3>Primary Implementation of CLA</h3><hr /><div class="info"><h5>Author: Fergal Byrne<b> <a href="mailto:fergalbyrnedublin@gmail.com">(fergalbyrnedublin@gmail.com)</a></b></h5><h5>Library: v0.1.1-SNAPSHOT</h5><h5>Date: 18 July 2014</h5><h5>Website: <a href="https://github.com/fergalbyrne/clortex">https://github.com/fergalbyrne/clortex</a></h5><h5>Generated By: <a href="http://www.github.com/zcaudate/lein-midje-doc">MidjeDoc</a></h5></div><br /><hr /></div><br /></header><section><div class="heading"><h1>clortex neurons</h1><h3>Primary Implementation of CLA</h3><hr /><div class="info"><h5>Author: Fergal Byrne<b> <a href="mailto:fergalbyrnedublin@gmail.com">(fergalbyrnedublin@gmail.com)</a></b></h5><h5>Library: v0.1.1-SNAPSHOT</h5><h5>Date: 18 July 2014</h5><h5>Website: <a href="https://github.com/fergalbyrne/clortex">https://github.com/fergalbyrne/clortex</a></h5><h5>Generated By: <a href="http://www.github.com/zcaudate/lein-midje-doc">MidjeDoc</a></h5></div><br /><hr /></div><div><div class="highlight"><pre><span class="s">"create a pure patch"</span>
<span class="p">(</span><span class="k">def </span><span class="nv">n</span> <span class="mi">1024</span><span class="p">)</span>
<span class="p">(</span><span class="k">def </span><span class="nv">p</span> <span class="p">(</span><span class="nf">.set-neurons</span> <span class="p">(</span><span class="nf">purep/patch</span><span class="p">)</span> <span class="p">(</span><span class="nb">repeat </span><span class="nv">n</span> <span class="p">(</span><span class="nf">pure-neuron/neuron</span><span class="p">))))</span>
<span class="p">(</span><span class="nb">count </span><span class="p">(</span><span class="nf">.neurons</span> <span class="nv">p</span><span class="p">))</span> <span class="nv">=></span> <span class="nv">n</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="p">(</span><span class="kd">defn </span><span class="nv">create-in-memory-db</span> <span class="p">[]</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">uri</span> <span class="s">"datomic:mem://patch-test-db"</span><span class="p">]</span>
<span class="p">(</span><span class="nf">d/delete-database</span> <span class="nv">uri</span><span class="p">)</span>
<span class="p">(</span><span class="nf">d/create-database</span> <span class="nv">uri</span><span class="p">)</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">conn</span> <span class="p">(</span><span class="nf">d/connect</span> <span class="nv">uri</span><span class="p">)</span>
<span class="nv">schema</span> <span class="p">(</span><span class="nb">load-file </span><span class="s">"resources/datomic/schema.edn"</span><span class="p">)]</span>
<span class="p">(</span><span class="nf">d/transact</span> <span class="nv">conn</span> <span class="nv">schema</span><span class="p">)</span>
<span class="nv">conn</span><span class="p">)))</span>
<span class="p">(</span><span class="kd">defn </span><span class="nv">create-free-db</span> <span class="p">[]</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">uri</span> <span class="s">"datomic:free://localhost:4334/patches"</span><span class="p">]</span>
<span class="p">(</span><span class="nf">d/delete-database</span> <span class="nv">uri</span><span class="p">)</span>
<span class="p">(</span><span class="nf">d/create-database</span> <span class="nv">uri</span><span class="p">)</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">conn</span> <span class="p">(</span><span class="nf">d/connect</span> <span class="nv">uri</span><span class="p">)</span>
<span class="nv">schema</span> <span class="p">(</span><span class="nb">load-file </span><span class="s">"resources/datomic/schema.edn"</span><span class="p">)]</span>
<span class="p">(</span><span class="nf">d/transact</span> <span class="nv">conn</span> <span class="nv">schema</span><span class="p">)</span>
<span class="nv">conn</span><span class="p">)))</span>
<span class="p">(</span><span class="kd">defn </span><span class="nv">create-adi-in-memory-db</span> <span class="p">[]</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">uri</span> <span class="s">"datomic:mem://patch-adi-db"</span><span class="p">]</span>
<span class="p">(</span><span class="nf">adi/datastore</span> <span class="nv">uri</span> <span class="nv">clortex-schema</span> <span class="nv">true</span> <span class="nv">true</span><span class="p">)))</span>
<span class="p">(</span><span class="k">def </span><span class="nv">patch-1</span> <span class="p">(</span><span class="nf">d/squuid</span><span class="p">))</span>
<span class="p">(</span><span class="k">def </span><span class="nv">patch-2</span> <span class="p">(</span><span class="nf">d/squuid</span><span class="p">))</span>
<span class="p">(</span><span class="k">def </span><span class="nv">patch-3</span> <span class="p">(</span><span class="nf">d/squuid</span><span class="p">))</span>
<span class="p">(</span><span class="k">def </span><span class="nv">patch-4</span> <span class="p">(</span><span class="nf">d/squuid</span><span class="p">))</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"create an adi-based db, add a patch"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">uri</span> <span class="s">"datomic:mem://adi-test"</span>
<span class="nv">ds</span> <span class="p">(</span><span class="nf">adi/datastore</span> <span class="nv">uri</span> <span class="nv">clortex-schema</span> <span class="nv">true</span> <span class="nv">true</span><span class="p">)</span>
<span class="nv">_add</span> <span class="p">(</span><span class="nf">adi/insert!</span> <span class="nv">ds</span> <span class="p">[{</span><span class="ss">:patch</span> <span class="p">{</span><span class="ss">:uuid</span> <span class="nv">patch-1</span><span class="p">}}])</span>
<span class="nv">check</span> <span class="p">(</span><span class="nf">->></span> <span class="p">(</span><span class="nf">adi/select</span> <span class="nv">ds</span> <span class="p">{</span><span class="ss">:patch/uuid</span> <span class="nv">patch-1</span><span class="p">})</span>
<span class="nb">first </span><span class="ss">:patch</span> <span class="ss">:uuid</span><span class="p">)</span>
<span class="nv">_tidy</span> <span class="p">(</span><span class="nf">d/delete-database</span> <span class="nv">uri</span><span class="p">)]</span>
<span class="nv">check</span><span class="p">)</span> <span class="nv">=></span> <span class="nv">patch-1</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"After creating a patch, we can find the patch"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)}</span>
<span class="nv">_</span> <span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="nv">patch</span> <span class="p">(</span><span class="nf">dbp/load-patch-by-uuid</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)]</span>
<span class="p">(</span><span class="ss">:patch/uuid</span> <span class="p">(</span><span class="ss">:patch</span> <span class="nv">patch</span><span class="p">)))</span> <span class="nv">=></span> <span class="nv">patch-1</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"After creating several patches, we can find them all"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-2</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-3</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/find-patch-uuids</span> <span class="nv">ctx</span><span class="p">))</span> <span class="nv">=></span> <span class="o">#</span><span class="p">{[</span><span class="nv">patch-1</span><span class="p">]</span> <span class="p">[</span><span class="nv">patch-2</span><span class="p">]</span> <span class="p">[</span><span class="nv">patch-3</span><span class="p">]}</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"Adding a neuron to a patch, we can find the neuron"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/find-neurons</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">))</span> <span class="nv">=></span> <span class="o">#</span><span class="p">{[</span><span class="mi">0</span><span class="p">]}</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"Adding several neurons to patches, we can find the neurons"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-2</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-2</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/find-neurons</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">))</span> <span class="nv">=></span> <span class="o">#</span><span class="p">{[</span><span class="mi">0</span><span class="p">]</span> <span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="p">[</span><span class="mi">2</span><span class="p">]}</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"Adding many neurons to a patch, we can find the neurons"</span>
<span class="p">(</span><span class="k">def </span><span class="nv">n</span> <span class="mi">65536</span><span class="p">)</span>
<span class="p">(</span><span class="k">def </span><span class="nv">n</span> <span class="mi">1024</span><span class="p">)</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nb">time </span><span class="p">(</span><span class="nf">dbp/add-neurons-to!</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="nv">n</span><span class="p">))</span>
<span class="p">(</span><span class="nb">count </span><span class="p">(</span><span class="nf">dbp/find-neurons</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)))</span> <span class="nv">=></span> <span class="nv">n</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="s">"Connecting one neuron to another, we can find the synapse"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-in-memory-db</span><span class="p">)</span> <span class="ss">:randomer</span> <span class="p">(</span><span class="nf">random-fn-with-seed</span> <span class="mi">123456</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neuron</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/connect-distal</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="mi">0</span> <span class="mi">1</span> <span class="nv">false</span><span class="p">)</span>
<span class="p">(</span><span class="nb">count </span><span class="p">(</span><span class="nf">dbp/synapse-between</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="mi">0</span> <span class="mi">1</span><span class="p">)))</span> <span class="nv">=></span> <span class="mi">1</span>
</pre></div>
</div><div><div class="highlight"><pre><span class="o">#</span><span class="nv">_</span><span class="p">(</span><span class="nf">fact</span> <span class="s">"Connecting many neurons to one another, we can find the synapses"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ctx</span> <span class="p">{</span><span class="ss">:conn</span> <span class="p">(</span><span class="nf">create-free-db</span><span class="p">)</span> <span class="ss">:randomer</span> <span class="p">(</span><span class="nf">random-fn-with-seed</span> <span class="mi">123456</span><span class="p">)}</span>
<span class="nv">n</span> <span class="mi">32768</span>
<span class="nv">randomer</span> <span class="p">(</span><span class="nf">random-fn-with-seed</span> <span class="mi">123456</span><span class="p">)]</span>
<span class="p">(</span><span class="nf">dbp/create-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-neurons-to!</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="p">(</span><span class="nb">* </span><span class="nv">n</span> <span class="mi">2</span><span class="p">))</span>
<span class="p">(</span><span class="nf">dbp/connect-distal</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="mi">0</span> <span class="mi">1</span> <span class="nv">false</span><span class="p">)</span>
<span class="p">(</span><span class="nb">time </span><span class="p">(</span><span class="nb">doseq </span><span class="p">[</span><span class="nv">i</span> <span class="p">(</span><span class="nb">range </span><span class="mi">100</span><span class="p">)]</span>
<span class="p">(</span><span class="nf">dbp/connect-distal</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="p">(</span><span class="nf">randomer</span> <span class="nv">n</span><span class="p">)</span> <span class="p">(</span><span class="nb">+ </span><span class="nv">n</span> <span class="p">(</span><span class="nf">randomer</span> <span class="nv">n</span><span class="p">))</span> <span class="nv">false</span><span class="p">)))</span>
<span class="p">(</span><span class="nb">count </span><span class="p">(</span><span class="nf">dbp/synapse-between</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="mi">0</span> <span class="mi">1</span><span class="p">)))</span> <span class="nv">=></span> <span class="mi">1</span>
<span class="p">)</span>
<span class="o">#</span><span class="nv">_</span><span class="p">(</span><span class="nf">fact</span> <span class="s">"Adding inputs to a patch, we can write and read the SDR"</span>
<span class="p">(</span><span class="k">let </span><span class="p">[</span><span class="nv">ds</span> <span class="p">(</span><span class="nf">create-adi-in-memory-db</span><span class="p">)</span>
<span class="nv">ctx</span> <span class="p">{</span><span class="ss">:ds</span> <span class="nv">ds</span> <span class="ss">:conn</span> <span class="p">(</span><span class="ss">:conn</span> <span class="nv">ds</span><span class="p">)</span> <span class="ss">:randomer</span> <span class="p">(</span><span class="nf">random-fn-with-seed</span> <span class="mi">123456</span><span class="p">)}]</span>
<span class="p">(</span><span class="nf">dbp/create-adi-patch</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/add-inputs-to!</span> <span class="nv">ctx</span> <span class="nv">patch-1</span> <span class="mi">12</span><span class="p">)</span>
<span class="p">(</span><span class="nf">dbp/input-sdr</span> <span class="nv">ctx</span> <span class="nv">patch-1</span><span class="p">)</span> <span class="nv">=></span> <span class="p">[</span><span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span> <span class="mi">0</span><span class="p">]</span>
<span class="p">))</span>
</pre></div>
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