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Commits on Jul 2, 2021

• Updated deep loss CNV calls (AlexsLemonade#1101)

  kgaonkar6

  authored
  e596c7d

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Commits on Jun 17, 2021

• De novo mutational signature extraction, PR 2/n (AlexsLemonade#1018)

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  Stephanie

  and

  jaclyn-taroni

  authored
  6bf301e

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Commits on Jun 9, 2021

• Visualize chromothripsis frequency by histology (AlexsLemonade#1098)

  LauraEgolf

  authored
  e6c1452

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• Hotspots maf addition ( as optional) update for oncoplots (AlexsLemonade#1092)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  36e57e4

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• Consensus seg update for oncoplot (AlexsLemonade#1088)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  d648e9b

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Commits on Jun 4, 2021

• Add fusion within TP53 loss annotation (AlexsLemonade#1095)

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  3 peopleauthored
  41846a5

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Commits on Jun 3, 2021

• fix DNA-RNA mapping using parent_aliquot_id (AlexsLemonade#1096)

  komalsrathi

  authored
  87b59b6

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Commits on May 28, 2021

• AlexsLemonade#959 HGG update hotspots (AlexsLemonade#1077)

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  3 peopleauthored
  c074457

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Commits on May 27, 2021

• AlexsLemonade#959 Tp53 classifier rerun for subtyping (AlexsLemonade#1073)

  kgaonkar6

  authored
  3dc359e

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• Run ShatterSeek and classify chromothripsis regions as high/low confidence (AlexsLemonade#1083)

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  LauraEgolf

  authored
  077cded

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Commits on May 26, 2021

• EPN subtyping update EZIP based subtyping (AlexsLemonade#1068)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  a9f4101

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Commits on May 25, 2021

• Revert meningioma pathology-free-text-diagnosis update (AlexsLemonade#1082)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  9aaa223

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• add Ganglioglioma int dx (AlexsLemonade#1078)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  b65de24

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• add Ganglioglioma int dx (AlexsLemonade#1078)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  a63ceb6

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Commits on May 20, 2021

• AlexsLemonade#959 Lgat update hotspots (AlexsLemonade#1076)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  74f0699

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• Recode integrated-diagnosis for LGAT based on pathology-free-text-diagnosis (AlexsLemonade#1060)

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  3 peopleauthored
  5823f11

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Commits on May 17, 2021

• AlexsLemonade#959 Cranio update hotspots (AlexsLemonade#1075)

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  kgaonkar6

  authored
  8bd1f0a

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Commits on May 13, 2021

• Update oncoprints to use histology-specific goi lists (AlexsLemonade#1046)

  cbethell

  authored
  4139943

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• Remove file that snuck in with AlexsLemonade#961 (AlexsLemonade#1070)

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  jaclyn-taroni

  and

  jashapiro

  authored
  2461cda

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• Update other-MAPK LGAT subtypes (AlexsLemonade#1062)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  4508f37

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• Rename module: sv-analysis -> chromothripsis (AlexsLemonade#1069)

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  LauraEgolf

  and

  jaclyn-taroni

  authored
  fb212be

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• AlexsLemonade#819 Part2 : Scavenge back hotspots to add to consensus calls (AlexsLemonade#961)

  kgaonkar6

  authored
  e760c46

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Commits on May 12, 2021

• Part2: Freec as default and neutral NA update to focal-cn-file-preparation (AlexsLemonade#1067)

  kgaonkar6

  authored
  1570f35

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• Add atypical choroid plexus papilloma to harmonized diagnosis (AlexsLemonade#1065)

  jaclyn-taroni

  authored
  f7c2f97

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• Combine broad histology oncoprints into a single multi-panel plot (AlexsLemonade#1051)

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  cbethell

  and

  jaclyn-taroni

  authored
  dcef05a

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• Immunedeconv molsubtype (AlexsLemonade#1055)

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  komalsrathi

  and

  jaclyn-taroni

  authored
  ece6c5e

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• Part1: Freec as default and neutral NA (AlexsLemonade#1066)

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  kgaonkar6

  and

  Ubuntu

  authored
  9afff4a

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Commits on May 11, 2021

• Recode Oncoprints (AlexsLemonade#1009)

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  3 peopleauthored
  c6144f7

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• Add pathology-free-text-diagnosis based Lymphoma subtypes (AlexsLemonade#1057)

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  kgaonkar6

  and

  jaclyn-taroni

  authored
  556fb4f

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• Add pathology-free-text-diagnosis based JXG subtypes (AlexsLemonade#1056)

  kgaonkar6

  authored
  54a2088

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Commits on May 10, 2021

• Updated analysis: medulloblastoma consensus subtypes (AlexsLemonade#1019)

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  komalsrathi

  and

  Jo Lynne Rokita

  authored
  2351521

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• Add pathology subtyping of glialneuronal tumors (AlexsLemonade#1017)

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  jaclyn-taroni

  authored
  a73f440

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• AlexsLemonade#819 Part1 update: Script to add maf col types (AlexsLemonade#1050)

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  kgaonkar6

  and

  jashapiro

  authored
  9d036f9

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Commits on May 7, 2021

• Recode adamantinomatous craniopharyngiomas per AlexsLemonade#994 (AlexsLemonade#1016)

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  jaclyn-taroni

  authored
  4b5ef67

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• Exclude non-LGG samples from LGAT subtyping (AlexsLemonade#1014)

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  jaclyn-taroni

  and

  Jo Lynne Rokita

  authored
  3a2ee4c

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