R/excluded_tools_data.csv at main · evidencesynthesis-tools/R · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
1. 2dSearch: Proprietary.
2. Adobe Illustrator CC: Proprietary.
3. A2A (Apples to Apples): SaaS/No public repo.
4. AlvisIR Food semantic search engine: SaaS/No public repo.
5. BADERI: SaaS/No public repo.
6. BEST (Biomedical Entity Search Tool): SaaS/No public repo.
7. BioReader: SaaS/No public repo.
8. Cientopolis Scolr: SaaS/No public repo.
9. CiteSpace: Proprietary.
10. CiteNetExplorer: Source code private.
11. CiteSeerX: SaaS/Hosted service.
12. Citavi: Proprietary.
13. Cochrane RevMan calculators: Proprietary.
14. Cochrane NMA toolkit: Resource collection/No software.
15. Comprehensive Meta-Analysis (CMA): Proprietary.
16. Connected Papers: Proprietary.
17. Coremine Medical: SaaS.
18. CrowdCARE: SaaS.
19. Data Abstraction Assistant (DAA): SaaS.
20. Deduklick: Proprietary.
21. DisMaNet: Service/Not software.
22. DistillerSR: Proprietary.
23. Doctor Evidence (DOC Data): Proprietary.
24. DTA MA (Diagnostic Test Accuracy Meta-Analysis): SaaS.
25. Eppi-Mapper: Proprietary/Closed.
26. EndNote: Proprietary.
27. EPPI-Reviewer: Proprietary.
28. Fiddle: Service.
29. GALAXY: Bioinformatics platform.
30. GRADEpro: Proprietary.
31. Graph Commons: SaaS.
32. HAWC: Institutional/No public repo.
33. HEpiMA: Source on request only/No public repo.
34. Import.io: Commercial SaaS.
35. Inciteful.xyz: SaaS.
36. INMEX: Web interface source not public.
37. JBI-SUMARI: Proprietary.
38. Jane (Journal/Author Name Estimator): Proprietary service.
39. JSTOR Text Analyser: Service.
40. Leaf: Institutional/Closed.
41. Litmaps: Proprietary.
42. LitSuggest: Service.
43. MAGICapp: Commercial/Institutional.
44. MarkerDB: Database.
45. MedCalc: Proprietary.
46. Medline (PubMed) trend: Service.
47. MeSH on Demand: Proprietary service.
48. Meta-Analysis Accelerator: Freemium/Source private.
49. MetaAnalysisOnline.com: Source code private.
50. MetaInsight: SaaS/No public repo found.
51. MetaMap: Restricted license.
52. MetaXL: Proprietary.
53. MetAnalysis: Proprietary.
54. MicrobiomeAnalyst: Web interface proprietary.
55. Microsoft Publisher: Proprietary.
56. MIX 2.0: Proprietary.
57. NAILS (Network Analysis Interface for Literature Studies): SaaS.
58. Nested-Knowledge: Proprietary.
59. NetworkAnalyst: Bioinformatics platform.
60. Network explorer: Service.
61. Neurosynth Compose: Data repository.
62. NVivo: Proprietary.
63. OmicsView: Bioinformatics platform.
64. OriginPro: Proprietary.
65. PEx (Project Explorer): Proprietary/Closed.
66. Paperpile: Proprietary.
67. Papers: Proprietary.
68. Polyglot Search Translator: Web service.
69. Practical Meta-Analysis Effect Size Calculator: Service.
70. PRISMA Flow Diagram Generator: Service.
71. Pymeta: Service.
72. PubMed PICO Tool: Service.
73. Publish or Perish: Proprietary.
74. Qiqqa: Proprietary.
75. Quertle: Proprietary.
76. Rayyan: Proprietary.
77. RefWorks: Proprietary.
78. ResearchRabbit: Proprietary.
79. Research Screener: SaaS.
80. Review Manager (RevMan): Proprietary.
81. RobotAnalyst: Proprietary/No public repo.
82. SAS: Proprietary.
83. scite.ai: Proprietary.
84. SciMAT: Source on uni web/No public repo.
85. Screenatron: Web service.
86. SnowGlobe: Source not public.
87. SPSS: Proprietary.
88. SRDB.PRO: Proprietary.
89. StArt tool: Source code private.
90. Stata: Proprietary.
91. SWIFT-Active Screener: Proprietary.
92. SWIFT-Review: Proprietary.
93. Syras: Proprietary.
94. SyRF: Proprietary.
95. SysRev: Proprietary.
96. Systematic Review Assistant: Prototype/No public repo.
97. Systematic Review Data Repository (SRDR): Platform/Service.
98. Systematic Review Toolbox: Catalogue.
99. Table Builder: Institutional/No public repo.
100. TaskExchange: Service.
101. The albatross plot: Requires proprietary Stata.
102. Trialstreamer: Service.
103. Trip Rapid Reviews: Service.
104. Vitruvian Plot: Non-commercial license/Not OSI.
105. WebPlotDigitizer (v5+): Proprietary.
106. WEasyMA: Proprietary.
107. What review is right for you?: Service.
108. WordStat: Proprietary.
109. Yale MeSH Analyzer: Proprietary service.
110. yEd Graph Editor: Proprietary.
111. Catchii: Source not public.
112. Dedupr: Internal service/No public repo.
113. Disputatron: Web service.
114. Medsyntax: Source not public.
115. PubMed PubReMiner: Web-only.
116. RCT Tagger: Web service.
117. SRDR+: Source not found.
118. Citation and Text-Based Framework for Retrieving Publications: Prototype.
119. doi2txt: Never fully developed.
120. ExaCT: Prototype.
121. forestr: Never fully developed.
122. GS Scraper: Never fully developed.
123. Grey Literature Reporter: Abandoned/In development.
124. GreyLitScrapR: Abandoned/In development.
125. ICASR Integration Engine (Integration & Research Weaving): Never developed.
126. Paperweight: Prototype.
127. PDF Annotation: Prototype.
128. PDF Reference Extraction: Prototype.
129. Reference Completer: Never fully developed.
130. Search Strategist: Never developed.
131. ACTIVE framework: Framework.
132. AMSTAR / AMSTAR 2 / R-AMSTAR: Checklist.
133. Anatomy of a Systematic Review: Guide.
134. A multicomponent decision tool for prioritising the updating of systematic reviews: Decision aid.
135. AppRaise: Framework/Uncertainty tool.
136. BestBETs Critical Appraisal Worksheets: Checklist/PDF.
137. Campbell evidence gap map guidance: Guidance.
138. CARE Checklist: Checklist.
139. CASP Checklists: Checklist.
140. CHEERS checklist: Checklist.
141. Checklist to operationalize measurement characteristics of patient-reported outcome measures: Checklist.
142. Checklist: Economic Evaluations: Checklist.
143. CheckMAP: Checklist.
144. COSMIN Risk of Bias checklist: Checklist.
145. Collaboration for Environmental Evidence Critical Appraisal Tool: Checklist.
146. DECiMAL: Guide.
147. Downs and Black: Checklist.
148. DUFSS: Questionnaire.
149. Dyba and Dingsoyr Quality Criteria: Criteria.
150. Effective Public Health Practice Project (EPHPP) Quality Assessment Tool: Checklist.
151. EMERGE: Framework.
152. EMPRO Tool: Framework/Rubric.
153. ENTREQ: Guideline.
154. FLC 3.0 critical appraisal tools: Closed source/Checklist.
155. Facilitating access to pre-processed research evidence in public health: Guidance.
156. Grey Matters: Guide/Checklist.
157. GRIM test calculator: Service/Calculator.
158. GRIPP2: Checklist.
159. Guidelines for Performing Systematic Literature Reviews in Software Engineering: Guideline.
160. Health Evidence Bulletin Wales: Checklist.
161. How to Read Articles That Use Machine Learning: Guidance.
162. ISPOR-AMCP-NPC: Questionnaire.
163. JBI Critical Appraisal Tools: Checklist.
164. John Hopkins University ClinicalTrials.gov Checklist: Checklist.
165. ML-PICO: Framework.
166. MATES: Checklist.
167. Mixed Methods Appraisal Tool (MMAT): Checklist.
168. Newcastle-Ottawa Scale (NOS): Checklist.
169. NICE TARs checklist: Checklist.
170. ORBIT (Outcome Reporting Bias in Trials) Matrix Generator: Service.
171. PerSPEcTiF: Framework.
172. PRECIS-2: Checklist.
173. Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) Statement (and extensions): Guideline.
174. PRESS Peer Review of Electronic Search Strategies: Guideline.
175. PROBAST: Checklist.
176. Protocol Format for Systematic Reviews of Animal Intervention Studies: Protocol format.
177. QAVALS: Checklist.
178. QATSO: Checklist.
179. Quality Assessment Tool for Observational Cohort and Cross-Sectional Studies: Checklist.
180. Quality in Prognosis Studies (QUIPS): Checklist.
181. QATSDD: Checklist.
182. Quality in Qualitative Evaluation: Framework.
183. Quality assessment with diverse studies (QuADS): Checklist.
184. RAMESES: Standards.
185. Reporting Machine Learning Analyses in Clinical Research: Guideline.
186. RETREAT: Decision tool.
187. Risk of bias assessment checklist for studies included in systematic reviews on drug adverse events: Checklist.
188. Risk of Bias Assessment Tool for Nonrandomized Studies (RoBANS): Checklist.
189. ROB 2.0: Methodology.
190. ROB-ME: Methodology.
191. ROB-MEN: Methodology/Checklist.
192. ROBINS-E: Methodology.
193. ROBINS-I: Methodology.
194. ROBIS: Methodology.
195. ROSES: Checklist.
196. Robme: Checklist.
197. RoB NMA tool: Methodology.
198. RTI Item Bank: Framework.
199. SANRA: Checklist.
200. Science in Risk Assessment and Policy (SciRAP): Checklist.
201. Scottish Intercollegiate Guidelines Network (SIGN) Critical Appraisal Checklists: Checklist.
202. Search Guide for Animal Studies: Guide.
203. Sex and Gender Appraisal Tool for Systematic Reviews (SGAT-SR): Checklist.
204. Sonar: No valid tool found/Description mismatch.
205. SPIDER: Framework.
206. SQUIRE 2.0: Guideline.
207. STARD: Guideline.
208. STROBE Statement: Guideline.
209. Specialist Unit for Research Evidence (SURE) Qualitative Studies Checklist: Checklist.
210. Specialist Unit for Research Evidence (SURE) RCT and Other Experimental Studies Checklist: Checklist.
211. Specialist Unit for Research Evidence (SURE) Systematic Review Checklist: Checklist.
212. Synthesis Without Meta-analysis (SWiM): Guideline.
213. SYRCLE Risk of Bias Tool: Checklist.
214. The Equity Checklist: Checklist.
215. The Evidence Project risk of bias tool: Checklist.
216. The GATE Frame: Framework.
217. The GRACE Checklist: Checklist.
218. The JADAD Score: Scale.
219. The REal Life EVidence AssessmeNt Tool (RELEVANT): Checklist.
220. The CHARMS Checklist: Checklist.
221. TIDieR Checklist: Guideline.
222. ToxRTool: Checklist.
223. TRASI: Framework.
224. Transparent Reporting of Evaluations with Nonrandomized Designs (TREND): Guideline.
225. Web-based AMSTAR checklist: Service.
226. When and how to update systematic reviews: Guidance.
227. A-MADMAN: No public repo/Omics.
228. ADAPTS: Omics.
229. Amanida: Omics.
230. BGLR: Omics.
231. BIOMEX: Omics.
232. CAPS: Lab tool.
233. CancerEST: No public repo/Omics.
234. CellDepot: Repository/Omics.
235. DExMA: Omics.
236. DEVEA: Omics.
237. ENIGMA-Viewer: Consortium visualization.
238. FIGS: Omics.
239. GSEMA: Omics.
240. GWAtoolbox: Omics.
241. GWEHS: Omics.
242. Genotype Harmonizer: Omics.
243. GeNNet: Omics.
244. GMCM: Omics.
245. GWAMA: Omics.
246. h0: Astronomy.
247. IBD TaMMA: Omics.
248. IGG3: No public repo/Omics.
249. InMoose: Omics.
250. KOGMWU: Omics.
251. M6Allele: Lab tool.
252. MAGE: Omics.
253. MADAM: Omics.
254. MAPPI-DAT: Lab tool.
255. MATCH-IT: No public repo/Omics.
256. MetaCyto: Omics.
257. MetaGenyo: Omics.
258. MetaMSD: Omics.
259. MetaMass: Omics.
260. MetaOmics: Omics.
261. MetaQTL: Omics.
262. MetaSKAT: Omics.
263. METASOFT: No public repo/Omics.
264. metLinkR: Omics.
265. Metasubtract: Omics.
266. metamicrobiomeR: Omics.
267. MungeSumstats: Omics.
268. NAM: Omics.
269. Neurosynth Compose: Repository.
270. OmicIntegrator: No public repo/Omics.
271. OmicsView: Omics.
272. PAReTT: Database retrieval.
273. PharmacoGx: Omics.
274. PitViper: Omics.
275. PRED-LD: Lab tool.
276. PyPop: Omics.
277. PYRAMA: Omics.
278. RankAggreg: Omics.
279. Rankprod: Restricted license/Omics.
280. RBPInper: Omics.
281. RCPA: Omics.
282. RetroBioCat: Biocatalysis tool.
283. remaCor: Omics.
284. rqt: Omics.
285. sPLINK: Omics.
286. SQC: Omics.
287. SMAGEXP: Omics.
288. Scope+: Omics.
289. ScreenBEAM: Omics.
290. SECIMTools: Omics.
291. SelectBCM: Omics.
292. SPAtest: Omics.
293. TagDigger: Omics.
294. TAMA: Omics.
295. Tourmaline: Omics.
296. ToNER: Lab tool.
297. Vulture: Lab tool.
298. wTO: Omics.
299. catmap: Omics.
300. fastMETA: Omics.
301. metaGE: Omics.
302. ofGEM: Omics.
303. corrmeta: Omics.
304. SRscore: Omics.
305. GSMA: No public repo.
306. Albatoss plot: Component of metap.
307. ananse: Source not found.
308. Confidence Interval Calculator: Excel format.
309. DBPedia: Repository.
310. Drug Herb Interaction Query Website: Database.
311. Drug-Gene Interaction Database (DGIdb): Database.
312. Epistemonikos: Database.
313. Facilitating access to pre-processed research evidence in public health: Resource.
314. Mapping MEDLINE: Resource.
315. MarkerDB: Database.
316. Medline (PubMed) trend: Resource.
317. Metadataset: Data.
318. NLM Medical Text Indexer (MTI): Backend tool.
319. PDQ-Evidence: Database.
320. PhenX Toolkit: Resource.
321. PubMed Search Filter for Animal Studies: Resource.
322. Meta-Essentials: Excel format/Non-commercial license.
323. MetaEasy: Excel format.
324. NetMetaXL: Excel format.
325. Search Whiteboard: Excel format.
326. roses-pdf-generator: Component/Utility.
327. roses-website: Component/Utility.
328. pdf-to-text: Utility.
329. paperweight-python: Component.
330. search_frontend: Component.
331. keywords_extract: Component.
332. search_counter: Utility.
333. search_parser: Utility.
334. bigquery-oag: Utility.
335. keyword-recommendation: Utility.
336. i3-export_to_drive: Utility.
337. Recent_citations: Utility.
338. Keyword_Identification: Utility.
339. keyword_synonyms: Utility.
340. ESMARConf2022_proposals: Conference material.
341. esmarconf_updater: Script.
342. shinyTemplate: Template.
343. esmarconfsandbox: Sandbox.
344. ESMARConf2023_Intro_GitHub: Workshop material.
345. metafor_reports: Report.
346. Automated_EGM: Project repo.
347. RCT_Predictor: Utility/Unclear relevance.