pipeline for using ribosomal flanking regions to improve bacterial genome assembly

A list of interesting genome browser and genome visualization programs

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Download FASTQ files from SRA or ENA repositories.

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Find clustered hits from a BLAST search

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

Pan-genome wide association studies

A complete pipeline for metagenomic analysis

Reorients assembled microbial sequences

Chat UI component for Shiny for R

Call LLM APIs from R

R toolkit for the analysis of single-cell chromatin data

Graph-based assembly phasing

Draw heatmap simply using a tidy data frame

Rpackage for SINGLe (SNIPS in Nanopore reads of Gene Libraries)

R interface to Mapbox GL JS v3 and Maplibre GL JS

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

binary releases of VS Code without MS branding/telemetry/licensing

We write your reusable computer vision tools. 💜

Efficient manipulation of biological strings

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

A Grammar of Animated Graphics

MaAsLin3: Microbiome Multivariate Association with Linear Models

Speedy versions of phyloseq functions

Visualization and Imputation of Missing Values

Multivariate Imputation by Chained Equations