Docker version don't load genome annotations

[mthjwu]

I just downloaded the docker image of the browser. It runs well, but can't load in genome annotations.

Here is how it looks:

Here is apache log I got:

root@9010c885452b:~# more /var/log/apache2/error.log
[Thu Sep 06 17:03:27.024453 2018] [mpm_event:notice] [pid 1708:tid 140174867167104] AH00489: Apache/2.4.1
8 (Ubuntu) configured -- resuming normal operations
[Thu Sep 06 17:03:27.024548 2018] [core:notice] [pid 1708:tid 140174867167104] AH00094: Command line: '/u
sr/sbin/apache2'
subtleKnife starting... >>>>>
cgi param parsed
done
subtleKnife starting... >>>>>
cgi param parsed
Hooked to hg19
fetching genome info...
done
subtleKnife starting... >>>>>
cgi param parsed
Hooked to hg19
reviveScaffold() done
normal dsp...
runmode: 0, jux tk: not available
not jumping...
not moving...
setDspBoundary: chr7 27053398 chr7 27373766
chromSl made...
entire length computed: 320368...
finalizeDsp_genome()...
entire length computed: 320368...
computing summary size (might truncate dsp) expected 990...
total # of summarySize exhausted (expecting 990, 990 left)...
summary size computed, 990 used in total...
moveBoundary_genome distance: 320368 spnum: 990 spsize: 323.604040
moveBoundary_genome distance: 320368 spnum: 990 spsize: 323.604040
entire length computed: 961104...
showRegionSl:
usedSummaryNumber: 2970
entireLength: 961104
(0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970
viewStart: chr7 27053398
track sl made
done
subtleKnife starting... >>>>>
cgi param parsed
Hooked to hg19
subtleKnife starting... >>>>>
cgi param parsed
Hooked to hg19
reviveScaffold() done
normal dsp...
runmode: 0, jux tk: not available
not jumping...
not moving...
entire length computed: 961104...
showRegionSl:
usedSummaryNumber: 2970
entireLength: 961104
(0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970
reviveScaffold() done
normal dsp...
runmode: 0, jux tk: not available
not jumping...
not moving...
entire length computed: 961104...
showRegionSl:
usedSummaryNumber: 2970
entireLength: 961104
(0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970
tabix file error: http://egg.wustl.edu/d/hg19/refGene.gz
track sl made
done
tabix file error: http://egg.wustl.edu/d/hg19/rmsk_all.gz
track sl made
done

Seems the error caused by the tabix files, but they are right there.

[mackeyja]

Following these steps got annotations working for me:
http://wiki.wubrowse.org/V42:_bigWig_and_bigBed_support_with_libBigWig

[lidaof]

Hi @mthjwu , glad you figured out, you can also change http to https in the tracks.json file, I will also update the docker image too.