run.sh

#!/bin/bash

#SCRIPT_PATH=`dirname $0`
source ./profile

if [[ ! -f _step_0_end.txt ]] ; then 
    echo "---------------------Step 0 start ---"
    # run step 0 
    echo `date` >>_step_0_start.txt
    $SCRIPT_PATH/step_0_split_barode.sh || exit 1
    echo `date` >>_step_0_end.txt
    echo "---------------------Step 0 end    ---"

fi

if [[ $USE_FILTER == "yes" ]] ; then 
    if [[ ! -f _step_1_end.txt ]] ; then 
    echo "---------------------Step 1 start ---"
        # run step 1
        echo `date` >>_step_1_start.txt
        $SCRIPT_PATH/step_1_filter.sh || exit 1
        echo `date` >>_step_1_end.txt
    echo "---------------------Step 1 end    ---"
    fi
else
    echo "--------------------- No filter detect"
fi

if [[ ! -f _step_2_end.txt ]] ; then 
    # run step 2
    echo "---------------------Step 2 start ---"
    echo `date` >>_step_2_start.txt
    $SCRIPT_PATH/step_2_fake_10X_data.sh || exit 1
    echo `date` >>_step_2_end.txt
    echo "---------------------Step 2 end    ---"
fi

if [[ ! -f _step_3_end.txt ]] ; then 
    # run step 2
    echo "---------------------Step 3 start ---"
    echo `date` >>_step_3_start.txt
    $SCRIPT_PATH/step_3_run_supernova.sh || exit 1
    echo `date` >>_step_3_end.txt
    echo "---------------------Step 3 end    ---"
fi