From ae38235f07e284c61eea595ef5b80fbc16d30e25 Mon Sep 17 00:00:00 2001 From: Julie Fabre Date: Wed, 30 Aug 2023 11:48:03 +0100 Subject: [PATCH 1/3] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 10d7d5a..d2c2dc3 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses this problem. It evaluates the quality of recorded units and extracts essential electrophysiological properties. -Bombcell is specifically tailored for units recorded with Neuropixels probes (3A, 1.0, and 2.0) using SpikeGLX or OpenEphys and spike-sorted with Kilosort. If you want to use bombcell in conjunction with another spike sorting algorithm, please raise a [github issue](https://github.com/Julie-Fabre/bombcell/issues), create a [pull request](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request), or email [us: juliemfabre[at]gmail[dot]com](mailto:juliemfabre@gmail.com). +Bombcell is specifically tailored for units recorded with Neuropixels probes (3A, 1.0, and 2.0) using SpikeGLX or OpenEphys and spike-sorted with Kilosort. If you want to use bombcell in conjunction with another spike sorting algorithm, please raise a [github issue](https://github.com/Julie-Fabre/bombcell/issues), create a [pull request](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request), or email [us: juliemfabre[at]gmail[dot]com](mailto:juliemfabre@gmail.com). Follow us on [twitter: basal_gang](https://twitter.com/basal_gang) for updates on bombcell. ### 📔 Bombcell wiki From c874e80fc3481aa5f06d41b89775c8d4c5b01947 Mon Sep 17 00:00:00 2001 From: Julie Fabre Date: Thu, 31 Aug 2023 08:36:10 +0100 Subject: [PATCH 2/3] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index d2c2dc3..78dc64e 100644 --- a/README.md +++ b/README.md @@ -36,7 +36,7 @@ To begin using Bombcell: #### Dependancies - [npy-matlab](https://github.com/kwikteam/npy-matlab) to load .npy data in. -- [prettify-matlab](https://github.com/Julie-Fabre/prettify-matlab) to make plots pretty. +- [prettify-matlab](https://github.com/Julie-Fabre/prettify_matlab) to make plots pretty. - If you have z-lib compressed ephys data, compressed with [mtscomp](https://github.com/int-brain-lab/mtscomp), you will additionally need the [zmat toolbox](https://uk.mathworks.com/matlabcentral/fileexchange/71434-zmat). More information about compressing ephys data [here](https://www.biorxiv.org/content/biorxiv/early/2023/05/24/2023.05.22.541700.full.pdf?%3Fcollection=). - MATLAB toolboxes: - Signal Processing Toolbox From bb58b6dd7549b0f7dac61e295031f6bf6cb9b301 Mon Sep 17 00:00:00 2001 From: Julie Fabre Date: Sat, 2 Sep 2023 16:36:38 +0100 Subject: [PATCH 3/3] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 78dc64e..eab9ab0 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ # 💣 Bombcell: find bombshell cells! 💣 bombcell -Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses this problem. It evaluates the quality of recorded units and extracts essential electrophysiological properties. +Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses this problem, evaluating the quality of recorded units and extracting essential electrophysiological properties. Bombcell can replace manual curation or can be used as a tool to aid manual curation. Bombcell is specifically tailored for units recorded with Neuropixels probes (3A, 1.0, and 2.0) using SpikeGLX or OpenEphys and spike-sorted with Kilosort. If you want to use bombcell in conjunction with another spike sorting algorithm, please raise a [github issue](https://github.com/Julie-Fabre/bombcell/issues), create a [pull request](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request), or email [us: juliemfabre[at]gmail[dot]com](mailto:juliemfabre@gmail.com). Follow us on [twitter: basal_gang](https://twitter.com/basal_gang) for updates on bombcell.