From a760dbfd6364dc2038c0fb4b49faca2b730e6f88 Mon Sep 17 00:00:00 2001 From: Peter Petersen Date: Wed, 22 Mar 2023 17:07:44 +0100 Subject: [PATCH] Update data-structure-and-format.md --- docs/datastructure/data-structure-and-format.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/datastructure/data-structure-and-format.md b/docs/datastructure/data-structure-and-format.md index 6cf8e0a..6a509ff 100644 --- a/docs/datastructure/data-structure-and-format.md +++ b/docs/datastructure/data-structure-and-format.md @@ -140,6 +140,7 @@ A MATLAB struct `session` stored in a .mat file: `basename.session.mat`. The ses * `source` : Source of channel coordinates * `layout` : Probe layout (e.g. linear,staggered,poly2,poly3,poly4,poly5) * `shankSpacing` : Shank spacing (in µm) + * `verticalSpacing` : Vertical spacing between channels (in µm) * `brainRegions` * `regionAcronym` : e.g. CA1 or HIP, Allen institute Atlas * `brainRegion` @@ -265,6 +266,7 @@ __Channels coordinates__ * `layout` : y position of each channel (in µm; [nChannels x 1]; optional). * `shankSpacing` : y position of each channel (in µm; [nChannels x 1]; optional). * `channel` : Channel list ([nChannels x 1]; optional). + * `verticalSpacing` : Vertical spacing between channels (in µm) This works as a simple 2D representation of recordings and will help you determine the location of your neurons. It is also used to determine the spike amplitude length constant of the spike waveforms across channels. __Allen Institute's Common Coordinate Framework__